PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

C2H2

Protein Properties

Length: 247aa MW: 27377.6 Da PI: 9.5404

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.F00336.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.2	6.6e-06	86	105	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++C+ C k+F+r nL+ H+ Eucgr.F00336.1.p 86 FSCHVCFKTFNRYNNLQMHM 105 89*****************9 PP
2	zf-C2H2	10.6	0.0018	170	192	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk+ k + ++H +++ Eucgr.F00336.1.p 170 FACRKCGKPLAVKGDWRTHEKNC 192 78*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.44E-5	77	108	No hit	No description
PROSITE profile	PS50157	10.055	86	113	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	2.7E-4	86	105	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	88	108	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	6.88E-5	155	190	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009813	Biological Process	flavonoid biosynthetic process
GO:0005634	Cellular Component	nucleus
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence Send to blast
MGIPFEPLPL LSCLAMALHE NPKGANPNAG PCRGDGEDVT VALQIGLPNY LGGSARSSSE 60 ITSRSAPMER YWIPTQQQIL IGFTHFSCHV CFKTFNRYNN LQMHMWGHGS QYRRGPESLK 120 GTQPRAMLGI PCYCCVEGCR NHIDHPRAKP LKDFRTLQTH YKRKHGSKPF ACRKCGKPLA 180 VKGDWRTHEK NCGKRWLCVC GSDFKHKRSL KDHIKSFGPG HGPFAPDSLD IGVEVSGGSV 240 APFMFV*

Functional Description ? help Back to Top
Source	Description
UniProt	May act as a transcriptional regulator involved in the differentiation of young endothelium. Altered differentiation results in incompetence for pigments synthesis and the lack of condensed tannins in the seed coat (PubMed:21477081). Plays a role in the regulatory network controlling flavonoid accumulation in endothelium cells during seed development (PubMed:21477081). {ECO:0000269\|PubMed:11782451, ECO:0000269\|PubMed:21477081}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.F00336.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010064216.1	0.0	PREDICTED: protein TRANSPARENT TESTA 1
Swissprot	Q8VWG3	1e-108	TT1_ARATH; Protein TRANSPARENT TESTA 1
TrEMBL	A0A059BKJ0	0.0	A0A059BKJ0_EUCGR; Uncharacterized protein
STRING	XP_010064216.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM239	28	237

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34790.1	1e-109	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Eucgr.F00336.1.p

Publications ? help Back to Top
Lian J, et al. Silencing of BnTT1 family genes affects seed flavonoid biosynthesis and alters seed fatty acid composition in Brassica napus. Plant Sci., 2017. 254: p. 32-47 [PMID:27964783]