PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.F00100.1.p
Common NameEUGRSUZ_F00100, LOC104447801
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 412aa    MW: 45278.3 Da    PI: 6.0986
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.F00100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.85.3e-10253301355
                       HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +h+ +Er RR++i +++  L+el+P +    +k   Ka +L + ++Y++sLq
  Eucgr.F00100.1.p 253 NSHSLAERVRREKISERMRMLQELVPGC----NKITGKAVMLDEIINYVQSLQ 301
                       58**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.23E-17248317IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.41E-11248305No hitNo description
PROSITE profilePS5088815.567250300IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.8E-17251317IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.5E-7253301IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-10256306IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MEGCDGGDVG FRHGGDNFLN FPHSGVTPSS VREEFSGMAI NPFVSSGWDP LVSLTQSYRF  60
ANPSMASGFP FSSHPGIMEN QRSGGDFPPP LGHNLSALTE QVSFERLPCS ESRSYLDAVG  120
YFGLPDIANS GCPPNYGSQR EDDHDGSEGA SANNKLSQDC RIEEDGEGSS PSVKRRKNAP  180
AHDTIYDSKE VKRDPSRVIS DVPKEWDEKK QKNEQTLHPN SQGKQTGKQV RDNVEAPKEN  240
YIHVRARRGQ ATNSHSLAER VRREKISERM RMLQELVPGC NKITGKAVML DEIINYVQSL  300
QQQVEFLSMK LAAVSPELSI NLERILSKDI FCSPGSSATI MDTERGIACS SPYTKGFFPE  360
AFPSLPSSNH HYPPLTQAFC ESELQTQCQS HFLSSSGVDS LGLNGRLKSE R*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00135DAPTransfer from AT1G10120Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.F00100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010059819.10.0PREDICTED: transcription factor bHLH74
TrEMBLA0A059BJ670.0A0A059BJ67_EUCGR; Uncharacterized protein
STRINGXP_010059819.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51962849
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.11e-70bHLH family protein