PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.F00049.1.p

Common Name

EUGRSUZ_F00049

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

C2H2

Protein Properties

Length: 157aa MW: 17515.2 Da PI: 8.8697

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.F00049.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.6	9.4e-05	81	103	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 C++Cg+ F+ + + H + H Eucgr.F00049.1.p 81 ICHKCGEQFKKLDAVEAHHLSkH 103 6*****************99877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	82	103	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 157 aa Download sequence Send to blast
METNLAPCFV DGVTLTTVRK MTRCSLNLRS WASEAKSAGI TAGVIRLRRL SSGHFIPERL 60 VLEASTWFQA VTVSQGSSVL ICHKCGEQFK KLDAVEAHHL SKHAVTELSD GDSSKRIVEI 120 ICQTSWLKSE HSSCEQIERV LKVHNMQRTL ARFKEY*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.F00049.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010059787.1	2e-52	PREDICTED: uncharacterized protein LOC104447774 isoform X1
Refseq	XP_018730882.1	1e-52	PREDICTED: uncharacterized protein LOC104447774 isoform X2
TrEMBL	A0A059BJ21	1e-111	A0A059BJ21_EUCGR; Uncharacterized protein
STRING	XP_010059787.1	6e-52	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3553	8	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27240.1	7e-35	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Eucgr.F00049.1.p