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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.E04108.1.p | ||||||||
Common Name | EUGRSUZ_E04108, LOC104445739 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 739aa MW: 81384.1 Da PI: 5.8554 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62.1 | 8.5e-20 | 71 | 126 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r++ +++t+ q++eLe++F+++++p+ ++r+eL+++lgL+ qVk+WFqN+R+++k Eucgr.E04108.1.p 71 RKRYHRHTQRQIQELEAFFKESPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 126 789999***********************************************998 PP | |||||||
2 | START | 213.2 | 9.1e-67 | 257 | 478 | 1 | 206 |
HHHHHHHHHHHHHHHHC-TT-EEEE.....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EE CS START 1 elaeeaaqelvkkalaeepgWvkss.....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....ka 79 ela +a++el+++a+ +ep+W e++n+de+ ++f+++ + +++ea+r+s+vv+m++ +lve+l+d qW+ + +a Eucgr.E04108.1.p 257 ELAVAAMEELIRMAQGGEPLWIPAGsgqpsEILNEDEYFRIFPRGIGpkplgFKSEASRESAVVIMNHINLVEILMDEH-QWSGVFCgivsRA 348 57899****************988888999**************999********************************.******99999** PP EEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEE CS START 80 etlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvt 165 +t+ev+s+g galq+m+ae+q++splvp R+ +fvRy++q+g+g+w++vdvS+d+ + +p + R++++pSg+li++++ng+skvt Eucgr.E04108.1.p 349 MTIEVLSTGvagnynGALQVMTAEFQVPSPLVPsRENYFVRYCKQHGDGTWAVVDVSLDNIRGNP----ILRSRRRPSGCLIQELPNGYSKVT 437 ****************************************************************9....6*********************** PP EEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 166 wvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 wvehv++++r +h+++r+lv+ gla+gak+wvatl+rqce+ Eucgr.E04108.1.p 438 WVEHVEVDDRAVHSIYRPLVNCGLAFGAKRWVATLDRQCER 478 ***************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 7.52E-20 | 53 | 128 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.9E-22 | 53 | 126 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.912 | 68 | 128 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.2E-18 | 69 | 132 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.12E-18 | 70 | 129 | No hit | No description |
Pfam | PF00046 | 2.3E-17 | 71 | 126 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 103 | 126 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 45.627 | 248 | 481 | IPR002913 | START domain |
SuperFamily | SSF55961 | 1.21E-35 | 250 | 480 | No hit | No description |
CDD | cd08875 | 8.07E-128 | 252 | 477 | No hit | No description |
SMART | SM00234 | 1.1E-66 | 257 | 478 | IPR002913 | START domain |
Pfam | PF01852 | 6.6E-56 | 258 | 478 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 1.3E-6 | 358 | 476 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 2.5E-24 | 497 | 730 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009845 | Biological Process | seed germination | ||||
GO:0009913 | Biological Process | epidermal cell differentiation | ||||
GO:0048497 | Biological Process | maintenance of floral organ identity | ||||
GO:0048825 | Biological Process | cotyledon development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 739 aa Download sequence Send to blast |
MFQPNMFDSH HHLLDITGAR SSESEVLKMR EIEDFETKSG TETMEPDPSG DDVQDPNNDD 60 NSNNNGQRQK RKRYHRHTQR QIQELEAFFK ESPHPDDKQR KELSRELGLE PLQVKFWFQN 120 KRTQMKAQHE RHENAILKAE NEKLRAENMR YREALSTATC PNCGGPAALG EMSFDEQHLR 180 IENARLKEEI DRISVIASKY VGKPLASNYP HLPPHMSSRS PDQFPAQSGL VGEMYGGIDL 240 RRSVSMPSEA DKPLIVELAV AAMEELIRMA QGGEPLWIPA GSGQPSEILN EDEYFRIFPR 300 GIGPKPLGFK SEASRESAVV IMNHINLVEI LMDEHQWSGV FCGIVSRAMT IEVLSTGVAG 360 NYNGALQVMT AEFQVPSPLV PSRENYFVRY CKQHGDGTWA VVDVSLDNIR GNPILRSRRR 420 PSGCLIQELP NGYSKVTWVE HVEVDDRAVH SIYRPLVNCG LAFGAKRWVA TLDRQCERLA 480 SSMAINIPSG DLLITSPEGR RSMLKLAERM VLSFCSGVGA STAHAWTTLS AAGSDNNVRV 540 MTRKSMDEPG RPPGIVLSAA TSFWLPVPPK RVFDFLRDEN SRNEWDILSN GGQVQEMAHI 600 ANGRDPGNSV SLLRVNNANS SQSNMLILQE SCTDSVGAYV IYAPVDIVAM NVVLNGGDPD 660 YVALLPSGFA ILPDGPEFGG GGGILEIGSG GSLLTVAFQI LVDTVPSAKL SLGSVATVNN 720 LIKCTVERIK ASVSCDNP* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to ATML1. {ECO:0000269|PubMed:12505995}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.E04108.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010057969.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein MERISTEM L1 | ||||
Refseq | XP_018728495.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein MERISTEM L1 | ||||
Swissprot | Q93V99 | 0.0 | PDF2_ARATH; Homeobox-leucine zipper protein PROTODERMAL FACTOR 2 | ||||
TrEMBL | A0A059CAG5 | 0.0 | A0A059CAG5_EUCGR; Uncharacterized protein | ||||
STRING | XP_010057969.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM491 | 28 | 149 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G04890.1 | 0.0 | protodermal factor 2 |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.E04108.1.p |
Entrez Gene | 104445739 |
Publications ? help Back to Top | |||
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