PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.E03314.1.p
Common NameEUGRSUZ_E03314, LOC104445286
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family LSD
Protein Properties Length: 453aa    MW: 48921.4 Da    PI: 3.9106
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.E03314.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD124.54.5e-08364388125
           zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                       Cg+C+ l+sY +GA++V+C +C t+
  Eucgr.E03314.1.p 364 CGSCQRLISYQPGAKYVQCLCCKTI 388
                       **********************997 PP
2zf-LSD133.28.6e-11402426125
           zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                       Cg C  lL+YP+GAp+V+C+ C  V
  Eucgr.E03314.1.p 402 CGTCAMLLMYPYGAPAVKCSACRSV 426
                       **********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010532.5E-10361391IPR005735Zinc finger, LSD1-type
PfamPF069431.3E-6364388IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010537.4E-9399428IPR005735Zinc finger, LSD1-type
PfamPF069432.9E-9402426IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009617Biological Processresponse to bacterium
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MEAQEELREE RMAEDEVEEE EEEGPPPGWE SGPPPPLPTS PLSARIETSA AMEVVGEEQT  60
ERPDEAEERE QEEKESPPPG WEAAACPSIG QQSEGTESEA VALVGEERAA EERMEEEQEE  120
EEEQDGPPPG WEAGARPSLE PGSEGMESEA VMEEEAKEEV DGLSSGWGID PHRPIEPPQS  180
ERMVKSDEME EAEEAEDGPP PGWGIDSHPS VEPQSERIES EESARENAMG EGAKKERGVE  240
DGPPPGWGIG PHSTIEPQSE MIESEGAAQE NGIGERAEGD EMEEDGPPPG WGNAPHRSIE  300
PGSEGIESKR VVEEERVKDD GAPPGWEPAP PPPASKVLQP APSTLMPSAP QPGRRTSEMA  360
QMVCGSCQRL ISYQPGAKYV QCLCCKTINF VLEEHLVGQV KCGTCAMLLM YPYGAPAVKC  420
SACRSVTEIG EHNKRTPWAV QQGRLPPPST VP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.E03314.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010057425.10.0PREDICTED: actin cytoskeleton-regulatory complex protein PAN1
TrEMBLA0A059C9I80.0A0A059C9I8_EUCGR; Uncharacterized protein
STRINGXP_010057425.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM136112226
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21610.13e-36lsd one like 2