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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.E03272.1.p | ||||||||
Common Name | EUGRSUZ_E03272 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | bHLH | ||||||||
Protein Properties | Length: 183aa MW: 20563.4 Da PI: 6.3672 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40.4 | 5.3e-13 | 13 | 62 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-.STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPk.askapskK.lsKaeiLekAveYIksLq 55 + Er+RR++++ f+eL +l+P+ + p +K ls + L +A +YI+sLq Eucgr.E03272.1.p 13 RKRTERNRRNQMKALFSELHSLVPQqS---PTEKtLSLPDQLGEAANYIRSLQ 62 5678*********************55...88888*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.455 | 8 | 61 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.37E-13 | 10 | 78 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.1E-12 | 13 | 75 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.5E-9 | 14 | 62 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 0.0021 | 14 | 67 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.71E-7 | 17 | 66 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence Send to blast |
MMESKPGSSR PDRKRTERNR RNQMKALFSE LHSLVPQQSP TEKTLSLPDQ LGEAANYIRS 60 LQVKVEKMRE QKEQLLEVGK INTTMNSGPM IGFKSPEIRI WNNKSILEVV LVTGLDGQFM 120 FNETVQVIHE EGADIVNASS SYVGDAMLHT IHAKVGEGDS SEERISERLQ KIVNDMLMES 180 HP* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.E03272.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010057407.1 | 1e-132 | PREDICTED: uncharacterized protein LOC104445269 isoform X1 | ||||
Swissprot | F4JIJ7 | 3e-41 | BH162_ARATH; Transcription factor bHLH162 | ||||
TrEMBL | A0A059C7W9 | 1e-131 | A0A059C7W9_EUCGR; Uncharacterized protein | ||||
STRING | XP_010057407.1 | 1e-132 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1278 | 25 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20970.1 | 1e-43 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.E03272.1.p |
Publications ? help Back to Top | |||
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