PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.E03270.2.p
Common NameEUGRSUZ_E03270
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 159aa    MW: 17876.8 Da    PI: 10.5166
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.E03270.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.12.7e-12961255
                      HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-.STCHHHHHHHHHHHHHHH CS
               HLH  2 rrahnerErrRRdriNsafeeLrellPk.askapskK.lsKaeiLekAveYIksLq 55
                      r+  +  Er+RR+r++  +++L +l+P+ +   p +  ls  + L kA +YIk+Lq
  Eucgr.E03270.2.p  9 RADRKTTERNRRNRMKALLSKLHSLVPPqC---PREStLSMPDQLGKAANYIKNLQ 61
                      6667889*********************88...55555*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.23E-13575IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.63E-8565No hitNo description
PROSITE profilePS5088811.719760IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.9E-13975IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.7E-91061IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MERKPGSSRA DRKTTERNRR NRMKALLSKL HSLVPPQCPR ESTLSMPDQL GKAANYIKNL  60
QVKVQKMREQ KERLLEIEKI NTTMNNGLTI GFKSPEIGIR KSGSILEVVL VTGLDGQFMF  120
NETVRVIHEE GADVMNANFS YVGDAMLHTV HAKVRICI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.E03270.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010057405.11e-111PREDICTED: uncharacterized protein LOC104445266 isoform X1
SwissprotF4JIJ71e-35BH162_ARATH; Transcription factor bHLH162
TrEMBLA0A059C8Q41e-113A0A059C8Q4_EUCGR; Uncharacterized protein
STRINGXP_010057405.11e-110(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.14e-38bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]