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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.E03270.1.p | ||||||||
Common Name | EUGRSUZ_E03270, LOC104445266 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | bHLH | ||||||||
Protein Properties | Length: 182aa MW: 20490.6 Da PI: 9.5644 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 37.8 | 3.5e-12 | 9 | 61 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-.STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPk.askapskK.lsKaeiLekAveYIksLq 55 r+ + Er+RR+r++ +++L +l+P+ + p + ls + L kA +YIk+Lq Eucgr.E03270.1.p 9 RADRKTTERNRRNRMKALLSKLHSLVPPqC---PREStLSMPDQLGKAANYIKNLQ 61 6667889*********************88...55555*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 7.2E-13 | 5 | 75 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.32E-8 | 5 | 65 | No hit | No description |
PROSITE profile | PS50888 | 11.719 | 7 | 60 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.4E-12 | 9 | 75 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.0E-8 | 10 | 61 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence Send to blast |
MERKPGSSRA DRKTTERNRR NRMKALLSKL HSLVPPQCPR ESTLSMPDQL GKAANYIKNL 60 QVKVQKMREQ KERLLEIEKI NTTMNNGLTI GFKSPEIGIR KSGSILEVVL VTGLDGQFMF 120 NETVRVIHEE GADVMNANFS YVGDAMLHTV HAKVGDGDST DERISQRLQE MVNDMLMELH 180 P* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.E03270.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010057405.1 | 1e-132 | PREDICTED: uncharacterized protein LOC104445266 isoform X1 | ||||
TrEMBL | A0A059C9F0 | 1e-131 | A0A059C9F0_EUCGR; Uncharacterized protein | ||||
STRING | XP_010057405.1 | 1e-132 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1278 | 25 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20970.1 | 7e-41 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.E03270.1.p |
Entrez Gene | 104445266 |