PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.E02866.1.p
Common NameEUGRSUZ_E02866
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family M-type_MADS
Protein Properties Length: 174aa    MW: 20041.7 Da    PI: 10.6916
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.E02866.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF49.17.1e-161764350
                      --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
            SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                      ie    + vtfskR+ gi KK +EL +LC+ ev ++ fs+ gk y +s
  Eucgr.E02866.1.p 17 IEKMEEKLVTFSKRKSGIYKKSSELITLCGSEVGIVTFSPAGKPYSFS 64
                      78888899***********************************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006621.334767IPR002100Transcription factor, MADS-box
SMARTSM004321.0E-17766IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.22E-21881IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-14929IPR002100Transcription factor, MADS-box
PfamPF003192.7E-191763IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-142944IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-144465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MARRQTRGRQ RNEMREIEKM EEKLVTFSKR KSGIYKKSSE LITLCGSEVG IVTFSPAGKP  60
YSFSHPSIES IANRFRNQNP AQNEGVDTLV ESHRRLRFGE LSQRHDELVH QVKADKAQGK  120
VLKQKTEARS GEGWWEAPMD GLNLEELRQM KARMEELRRN LKSSINQRNQ GATS
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.E02866.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010059075.16e-81PREDICTED: agamous-like MADS-box protein AGL61
TrEMBLA0A059C7931e-125A0A059C793_EUCGR; Uncharacterized protein (Fragment)
STRINGXP_010059070.11e-126(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04100.12e-38AGAMOUS-like 57