PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.E02827.1.p
Common NameEUGRSUZ_E02827
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family M-type_MADS
Protein Properties Length: 149aa    MW: 16946.2 Da    PI: 10.1066
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.E02827.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF53.23.9e-17250149
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                      k+ien+s r +tfskR+  i KKA+EL +LC+aev  + fs++g+ + +
  Eucgr.E02827.1.p  2 KQIENESSRLITFSKRKSSINKKASELVTLCGAEVGFVAFSPSGNPFSF 50
                      78*****************************************986666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554555.23E-21172IPR002100Transcription factor, MADS-box
SMARTSM004326.6E-15153IPR002100Transcription factor, MADS-box
PROSITE profilePS5006619.708154IPR002100Transcription factor, MADS-box
PfamPF003198.2E-21450IPR002100Transcription factor, MADS-box
PRINTSPR004047.9E-71631IPR002100Transcription factor, MADS-box
PRINTSPR004047.9E-73152IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MKQIENESSR LITFSKRKSS INKKASELVT LCGAEVGFVA FSPSGNPFSF AHPSIDAVAN  60
RFLNRNPSPN NSSQALVESY RQAKCKELNQ QHDELYNQIK AEKAQGKALK RLTKGKSDAA  120
WWEAPIEELN REELYQMKGR MEELKRSLR
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.E02827.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010059060.11e-106PREDICTED: agamous-like MADS-box protein AGL61
TrEMBLA0A059C6S21e-106A0A059C6S2_EUCGR; Uncharacterized protein (Fragment)
STRINGXP_010059060.11e-105(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.11e-38AGAMOUS-like 61