PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.E02743.1.p

Common Name

EUGRSUZ_E02743, LOC104445001

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

bHLH

Protein Properties

Length: 267aa MW: 29666.8 Da PI: 8.7223

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.E02743.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.8	3.4e-12	70	116	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riNs +++Lr l+P +K++Ka+ L ++v +k+L Eucgr.E02743.1.p 70 KSHSEAERRRRERINSHLNTLRGLVPCT-----EKMDKATLLAEVVSQVKEL 116 68***********************8.....7********99988887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.675	67	116	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.9E-10	70	116	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.1E-13	71	120	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	7.72E-13	71	119	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.2E-10	73	122	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd04873	9.22E-4	155	223	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence Send to blast
MALYAPNSSF PIASDFFNVF DTFQRDFGGI NGVPRGGSLV LDSDKSELVK APVGVIKKGV 60 TQEKLMAAMK SHSEAERRRR ERINSHLNTL RGLVPCTEKM DKATLLAEVV SQVKELKKKA 120 IEASKGLLVP MDADEITVEP CGDGARDDEF SFRASICCEY RPELLSEMRR ALEVLPLKIV 180 KTEISTLEGR VKNAFVFSSS AEERKNFDSE ARQSLMSSVH QALNSLRDKS PDLPEYSPRT 240 TITSKRRRLT SFDSSSSSSR ETRSYC*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	75	80	ERRRRE
2	244	248	KRRRL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.E02743.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010057079.1	0.0	PREDICTED: transcription factor bHLH106
TrEMBL	A0A059C6W6	0.0	A0A059C6W6_EUCGR; Uncharacterized protein
STRING	XP_010057079.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15581	10	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41130.1	4e-33	bHLH family protein

Link Out ? help Back to Top
Phytozome	Eucgr.E02743.1.p
Entrez Gene	104445001