PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.E02388.1.p
Common NameEUGRSUZ_E02388, LOC104446742
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family M-type_MADS
Protein Properties Length: 176aa    MW: 19563.2 Da    PI: 6.5226
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.E02388.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF63.62.2e-201761145
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                      k ienk +r+vtfskR +g++ KA+EL +LC+aeva++ +s++g+
  Eucgr.E02388.1.p 17 KIIENKNKREVTFSKRHQGMFRKASELAILCGAEVAIVTYSPHGN 61
                      579***************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.6E-23968IPR002100Transcription factor, MADS-box
PROSITE profilePS5006622.455969IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.89E-251079IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-161131IPR002100Transcription factor, MADS-box
PfamPF003194.2E-221965IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-163146IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-164667IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MAEAKKKSQG RRRVECKIIE NKNKREVTFS KRHQGMFRKA SELAILCGAE VAIVTYSPHG  60
NPFVFGHPGV DAVINRYMPD GVVTEVNEAA AAAAALRAVD KHKKEYQDAM SKLEEVRMAE  120
VDAGKRGAAG NSEDQMWWNE NVDDIMGVEE LDYYADSLER LMKMVADRVD NKPCA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.E02388.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010058863.11e-128PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLA0A059C6A31e-126A0A059C6A3_EUCGR; Uncharacterized protein
STRINGXP_010058863.11e-127(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-26AGAMOUS-like 62