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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.E01600.1.p | ||||||||
Common Name | EUGRSUZ_E01600, LOC104444449 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | SBP | ||||||||
Protein Properties | Length: 368aa MW: 38759.7 Da PI: 8.8649 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 128.2 | 3.2e-40 | 209 | 286 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cq+egC+adl++ak+yhrrhkvCe+hska++v++ gl+qrfCqqCsrfh l efD++krsCr+rLa+hn+rrrk+++ Eucgr.E01600.1.p 209 RCQAEGCNADLTHAKHYHRRHKVCEFHSKAAAVIAGGLTQRFCQQCSRFHLLAEFDNGKRSCRKRLADHNRRRRKSHQ 286 6**************************************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.1E-34 | 203 | 271 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.24 | 207 | 284 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.15E-37 | 208 | 287 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.2E-30 | 210 | 283 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009554 | Biological Process | megasporogenesis | ||||
GO:0009556 | Biological Process | microsporogenesis | ||||
GO:0048653 | Biological Process | anther development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 368 aa Download sequence Send to blast |
MLEYEWGLGA NPSQILISAD DPTHDPTQTH HHPHHHHPML DHYAVSPHQS FPSSSAAAAA 60 THILSSPNAF SPFAPPHHQQ PPPIAAAHIH NAHHPLFDPR VFGGASYPPP ANPFALDCFG 120 GGGGGGGGGG NGGGFLMVPK SEDATGARPS PAAELAAARI GLNLGGRTYF ASSVAAEDDF 180 VSRLYRRPSA GRAGGEGGGV GSAAANAPRC QAEGCNADLT HAKHYHRRHK VCEFHSKAAA 240 VIAGGLTQRF CQQCSRFHLL AEFDNGKRSC RKRLADHNRR RRKSHQQPGR DNLAKTQQEG 300 CRNSSGDNPS RSPPDSGTQS ASSVTVALSP PRMSLDCFRQ SHHRGYQPPS SSSSASSPSC 360 SLFFSSG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 7e-30 | 201 | 283 | 1 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00090 | SELEX | Transfer from AT1G02065 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.E01600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010056422.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 8 | ||||
TrEMBL | A0A059C4M7 | 0.0 | A0A059C4M7_EUCGR; Uncharacterized protein | ||||
STRING | XP_010056422.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7010 | 27 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G02065.1 | 2e-63 | squamosa promoter binding protein-like 8 |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.E01600.1.p |
Entrez Gene | 104444449 |