PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

HD-ZIP

Protein Properties

Length: 298aa MW: 32686.6 Da PI: 7.4204

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.E01577.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58	1.6e-18	129	183	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++++eq +Lee F+++++++ +++ LAk+l+L+ rqV vWFqNrRa+ k Eucgr.E01577.1.p 129 RKKLRLSREQSLVLEETFKEHNTLNPKQKLALAKQLNLSPRQVEVWFQNRRARTK 183 778899***********************************************98 PP
2	HD-ZIP_I/II	127.4	6.1e-41	129	218	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rls+eq+ +LEe+F+e+++L+p++K +la++L+l+prqv+vWFqnrRARtktkq+E+d+e+Lkr++d+l++en+rL+kev+eLr +l Eucgr.E01577.1.p 129 RKKLRLSREQSLVLEETFKEHNTLNPKQKLALAKQLNLSPRQVEVWFQNRRARTKTKQTEVDCEYLKRCCDNLTQENKRLQKEVQELR-AL 218 69*************************************************************************************9.55 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04618	1.4E-25	1	99	IPR006712	HD-ZIP protein, N-terminal
Gene3D	G3DSA:1.10.10.60	3.5E-19	112	185	IPR009057	Homeodomain-like
SuperFamily	SSF46689	6.27E-20	116	187	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.67	125	185	IPR001356	Homeobox domain
SMART	SM00389	3.6E-17	127	189	IPR001356	Homeobox domain
Pfam	PF00046	6.0E-16	129	183	IPR001356	Homeobox domain
CDD	cd00086	5.34E-17	129	186	No hit	No description
PROSITE pattern	PS00027	0	160	183	IPR017970	Homeobox, conserved site
CDD	cd14686	0.00537	178	217	No hit	No description
SMART	SM00340	2.6E-25	185	228	IPR003106	Leucine zipper, homeobox-associated
Pfam	PF02183	1.0E-11	185	219	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence Send to blast
MGEQDDGLGL SLSLGCGKSA LSLNLNLVEA PVQSRQSPGQ KCSWNEIFHS PETNSKTRPL 60 FGGVGVNRDI LVVDLDDDNH VSSPNSTVSS ISGKRSERDP HGDNEVEAER TSCSCESIEE 120 DGSGGDGARK KLRLSREQSL VLEETFKEHN TLNPKQKLAL AKQLNLSPRQ VEVWFQNRRA 180 RTKTKQTEVD CEYLKRCCDN LTQENKRLQK EVQELRALKL SPQLYMHMNP PTTLTMCPSC 240 QRVSVPSSSL SPPSSSSVTA SVIGPVGPVH NPFSQSGPSI NPWARLQMQQ GLNNLHS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	177	185	RRARTKTKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.E01577.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By transition from light to far-red light. {ECO:0000269\|PubMed:8106086}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010056406.1	0.0	PREDICTED: homeobox-leucine zipper protein ATHB-4
Swissprot	P92953	1e-89	ATHB4_ARATH; Homeobox-leucine zipper protein ATHB-4
TrEMBL	A0A059C3T5	0.0	A0A059C3T5_EUCGR; Uncharacterized protein
STRING	XP_010056406.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2577	27	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60390.1	1e-57	homeobox-leucine zipper protein 3

Link Out ? help Back to Top
Phytozome	Eucgr.E01577.1.p
Entrez Gene	104444435

Publications ? help Back to Top
Carabelli M,Turchi L,Ruzza V,Morelli G,Ruberti I Homeodomain-Leucine Zipper II family of transcription factors to the limelight: central regulators of plant development. Plant Signal Behav, 2014. [PMID:23838958] Francisco M, et al. Genome Wide Association Mapping in Arabidopsis thaliana Identifies Novel Genes Involved in Linking Allyl Glucosinolate to Altered Biomass and Defense. Front Plant Sci, 2016. 7: p. 1010 [PMID:27462337] Gallemí M, et al. A non-DNA-binding activity for the ATHB4 transcription factor in the control of vegetation proximity. New Phytol., 2017. 216(3): p. 798-813 [PMID:28805249]