PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.E01509.1.p

Common Name

EUGRSUZ_E01509, LOC104444411

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

GRAS

Protein Properties

Length: 730aa MW: 79875.8 Da PI: 6.4419

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.E01509.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	328.2	1.6e-100	372	728	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 v++L++++e +++g+ elaq +Larl+++ sp g+p+ R+a+y++eAL+ l+ ++ +p + s+ + + ++ a+k fsevsP+l+f+ Eucgr.E01509.1.p 372 VDQLYKAVELIEAGNPELAQGILARLNHQLSPIGKPFIRAAFYVKEALQLLLQT------NSTNPLAFSPFSLIYKIGAYKSFSEVSPVLQFA 458 789************************************************9......555666666666***************** PP GRAS 95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrle 187 ++t+Nqa lea+e+ +rvHi+ fd+++G+QW++L+q+La R++g+ sl+iT+++sp +++ el t+e+L++fA+el++ +ef+v+ ++l+ Eucgr.E01509.1.p 459 NFTCNQAFLEALEEYDRVHILSFDVGYGGQWASLMQELALRNKGSRSLKITAFASPMIHDELELGLTQENLKHFANELNIYVEFEVVNIEALS 551 ***********************************************************************************888776 PP GRAS 188 dl.eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres 279 + +e L+++ gEa+aVnl ++ ++++ +s ++vL+++k+lsPk+vv ++ +d+ +++F +++++al+ ys+l++sl+a + Eucgr.E01509.1.p 552 SSsWPEPLNIRDGEAIAVNLPIASFSTH------PSILPSVLRFIKQLSPKIVVSLDRSCDRIDAPFPQHVVQALNSYSSLLESLDAL-NVNF 637 652699************999887......334457*****************************************876.4567 PP GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSa 372 + ++k+Er +l++ i++++ ++++ e+ +Wr+ + ++GF+p+++s+++++qa++l+++++++g++ve++++slvl+W++++L+svSa Eucgr.E01509.1.p 638 DVMQKIERYFLQPGIEKIIRGRHRS----PEKTDSWRSLFLSSGFSPLAFSNFNESQAECLVQRTPVRGFHVEKRQHSLVLCWQRKELLSVSA 726 ***************998888....99************************************************************ PP GRAS 373 Wr 374 Wr Eucgr.E01509.1.p 727 WR 728 *8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	43.813	345	708	IPR005202	Transcription factor GRAS
Pfam	PF03514	5.4E-98	372	728	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 730 aa Download sequence Send to blast
MKATPLGVVL GFSAATDSSL KDHQHHRHHH QEEHQKWLST ETPSSKLGNF FVGSEKSSLL 60 DIRRSLSPQP SSTLSSSLNS SGCAGASTDT TGAAGAAAAA ASGNNTPRGG ASGKCGMGAE 120 DWEAVLPENG QEQSIMRMIM GDIEDPSVGL SKLLQGTGGS QELAFGAGFG ELDQGFSFEP 180 MTGSNLNSEA SLHDCGSDFP LGGSNVHGNN VRIPSVSNPI LFPGQRKPNS FSSSSANNAL 240 VPALPLGVFQ LQQDGSLDEK PMVFDPQAIV NQNQATYPQN PSFFVPLGHT QMQDHDLLSA 300 PPPKRQNSGP GGPNYSSSRT GLVNSGQDTF VRHQEQYHFH PQQFQTQRPV PAAMKQKMSD 360 ELPNHQVQQA IVDQLYKAVE LIEAGNPELA QGILARLNHQ LSPIGKPFIR AAFYVKEALQ 420 LLLQTNSTNP LAFSPFSLIY KIGAYKSFSE VSPVLQFANF TCNQAFLEAL EEYDRVHILS 480 FDVGYGGQWA SLMQELALRN KGSRSLKITA FASPMIHDEL ELGLTQENLK HFANELNIYV 540 EFEVVNIEAL SSSSWPEPLN IRDGEAIAVN LPIASFSTHP SILPSVLRFI KQLSPKIVVS 600 LDRSCDRIDA PFPQHVVQAL NSYSSLLESL DALNVNFDVM QKIERYFLQP GIEKIIRGRH 660 RSPEKTDSWR SLFLSSGFSP LAFSNFNESQ AECLVQRTPV RGFHVEKRQH SLVLCWQRKE 720 LLSVSAWRY*

Sequence ? help Back to Top

Protein Sequence Length: 730 aa Download sequence Send to blast

MKATPLGVVL GFSAATDSSL KDHQHHRHHH QEEHQKWLST ETPSSKLGNF FVGSEKSSLL  60
DIRRSLSPQP SSTLSSSLNS SGCAGASTDT TGAAGAAAAA ASGNNTPRGG ASGKCGMGAE  120
DWEAVLPENG QEQSIMRMIM GDIEDPSVGL SKLLQGTGGS QELAFGAGFG ELDQGFSFEP  180
MTGSNLNSEA SLHDCGSDFP LGGSNVHGNN VRIPSVSNPI LFPGQRKPNS FSSSSANNAL  240
VPALPLGVFQ LQQDGSLDEK PMVFDPQAIV NQNQATYPQN PSFFVPLGHT QMQDHDLLSA  300
PPPKRQNSGP GGPNYSSSRT GLVNSGQDTF VRHQEQYHFH PQQFQTQRPV PAAMKQKMSD  360
ELPNHQVQQA IVDQLYKAVE LIEAGNPELA QGILARLNHQ LSPIGKPFIR AAFYVKEALQ  420
LLLQTNSTNP LAFSPFSLIY KIGAYKSFSE VSPVLQFANF TCNQAFLEAL EEYDRVHILS  480
FDVGYGGQWA SLMQELALRN KGSRSLKITA FASPMIHDEL ELGLTQENLK HFANELNIYV  540
EFEVVNIEAL SSSSWPEPLN IRDGEAIAVN LPIASFSTHP SILPSVLRFI KQLSPKIVVS  600
LDRSCDRIDA PFPQHVVQAL NSYSSLLESL DALNVNFDVM QKIERYFLQP GIEKIIRGRH  660
RSPEKTDSWR SLFLSSGFSP LAFSNFNESQ AECLVQRTPV RGFHVEKRQH SLVLCWQRKE  720
LLSVSAWRY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	3e-33	384	728	16	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.E01509.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010056372.1	0.0	PREDICTED: scarecrow-like protein 22
TrEMBL	A0A059C3M9	0.0	A0A059C3M9_EUCGR; Uncharacterized protein
STRING	XP_010056372.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8574	27	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00150.1	1e-141	GRAS family protein

Link Out ? help Back to Top
Phytozome	Eucgr.E01509.1.p
Entrez Gene	104444411