PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.E01219.1.p | ||||||||
Common Name | EUGRSUZ_E01219 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | FAR1 | ||||||||
Protein Properties | Length: 614aa MW: 71287.9 Da PI: 8.1441 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 62.8 | 9.9e-20 | 13 | 96 | 3 | 90 |
FAR1 3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Y +YA GF vrksk +k+ ++geit+rtfvC++eg++ +++++ +++ ++ e r+gC a ++ k e +g +ev++ + +HnHe+ Eucgr.E01219.1.p 13 YVAYAIGKGFGVRKSKIRKN-DKGEITRRTFVCNCEGYAINSSDQ--ERKYEKLEVRCGCPAFIRFKVE-NGSYEVIDYVPKHNHEFI 96 99**************9999.8888**************999877..8888999**************9.***************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.4E-17 | 13 | 96 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 4.6E-33 | 218 | 312 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 8.333 | 498 | 534 | IPR007527 | Zinc finger, SWIM-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 614 aa Download sequence Send to blast |
MVFASELEAY HKYVAYAIGK GFGVRKSKIR KNDKGEITRR TFVCNCEGYA INSSDQERKY 60 EKLEVRCGCP AFIRFKVENG SYEVIDYVPK HNHEFIPEHQ RHLIRCGRMI SDTCKGVLVD 120 MAKAGIGGTT AYKFLANEAG GSQNLGFILR DCQNFLQGER LNYIERGDCQ SLLNHFHCMQ 180 MQNPMFFYAQ QVDQDGRLTN LFWRDSLSKF DYDCFGDVMV FDTTYRTNMY SLICAPFVGV 240 NHHWKNTLFG CAFLLDETAD SFIWLFEVFL KSMGNKAPKT IFTDQDHAMA KAIQIVFPNT 300 QHRLCTWHIE KNANKNIPHL YQKSRFKDKY FSRLMYKCKS EDEFESTWRK MQEEWDTENN 360 SWLQRLYDLR HKWSSAFGRD IFSCGIKSSQ RSESTNNVFQ QFSKKTSTLI QFVHYYEEQL 420 KHMREIENQD DYSSRGTPRL QISYNGILTH AASVYTRAIF GRFYEEFLQS LSEKISGTTF 480 DGFIYEYTLK CDGIQSEHVV RFNPTDFSVS CECKLFESKG WLCRHALHIL NGNISVSAIP 540 SSYILKRWTK GAKQGYVNDE SHEISPGPST FNRFSVLMQS AFEVMSLGAQ DENTMRIVKK 600 NLKVAVAEIA SYNS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.E01219.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010056981.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | A0A059C3I9 | 0.0 | A0A059C3I9_EUCGR; Uncharacterized protein (Fragment) | ||||
STRING | XP_010056981.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM118 | 26 | 253 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 1e-113 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.E01219.1.p |