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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.E01205.1.p | ||||||||
Common Name | EUGRSUZ_E01205 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | Trihelix | ||||||||
Protein Properties | Length: 294aa MW: 34729.9 Da PI: 7.6042 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 79.8 | 3.8e-25 | 33 | 114 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+++e+++ i++r e+e+++ ++k++k+lWe vs +m+erg++r+p+qCk+kw+nl +ryk ++++ + s+++cp+f++l+ Eucgr.E01205.1.p 33 QWSQEETREFIRIRAELERDFTAAKRNKNLWEIVSGRMKERGYRRTPEQCKCKWKNLLNRYKGKETSDPD----SERKCPFFEELH 114 7**************************************************************9999998....4678******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 6.24E-5 | 30 | 93 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.0E-5 | 30 | 92 | IPR001005 | SANT/Myb domain |
Pfam | PF13837 | 6.7E-24 | 32 | 116 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.3E-5 | 33 | 92 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 8.397 | 34 | 90 | IPR017877 | Myb-like domain |
CDD | cd12203 | 4.80E-23 | 34 | 97 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 294 aa Download sequence Send to blast |
MASSLLIPAE AAGAAAPQQQ QPRPPQLQQH QPQWSQEETR EFIRIRAELE RDFTAAKRNK 60 NLWEIVSGRM KERGYRRTPE QCKCKWKNLL NRYKGKETSD PDSERKCPFF EELHALFIER 120 AKNMQRLHLE SEGTSVQAKK KLKRYGGNQS SDELLEADDE DEDDSDEERP SKVGSRKRKA 180 KEVTINKHMG GTSGVSGRSG GADTLEMLRE FFNQQQEMEM QWRDMMERRA RERLLFEQEW 240 RQSMEKLERE RLMVEQAWRE QEEQRRSREE HRAERRDALL TTLLNKLLHE SDL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ebi_A | 1e-12 | 34 | 112 | 7 | 86 | DNA binding protein GT-1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.E01205.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010056151.1 | 0.0 | PREDICTED: trihelix transcription factor GT-3b | ||||
TrEMBL | A0A059C3B6 | 0.0 | A0A059C3B6_EUCGR; Uncharacterized protein | ||||
STRING | XP_010056151.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM17512 | 9 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G01380.1 | 9e-26 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.E01205.1.p |