PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.E01049.1.p
Common NameEUGRSUZ_E01049, LOC104446171
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 451aa    MW: 49873.6 Da    PI: 7.4141
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.E01049.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.51.4e-14267312454
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       +h e+Er+RRd++N++f  Lr+++P+       +++Ka+ L  Av+YIk+L
  Eucgr.E01049.1.p 267 SHVEAERQRRDKMNQRFYALRSVVPNV-----SRMDKASLLADAVDYIKEL 312
                       799***********************6.....4****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142156.2E-3825194IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474595.23E-18261324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.949263312IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-17267322IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.5E-12267312IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.95E-14268313No hitNo description
SMARTSM003533.7E-16269318IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MEELTSCASS SSVVPKYHKA PPTLQQLVHL ILQTRTEGWV YSIFWQPSRD EHGGLVLTWG  60
DGHFRGTTKD PSASKPSPKR VLEEAQFLDG KLSHGSDNGD PEWYYIFSVT RSYSSEDGIL  120
GRAFRSGGHV WLSGEDRPEL EMYEHDERVK EARMYGIKSI VCISVPNGSG VLELGSAEII  180
REDWSLVHLA KNLFPSHFSS LRVDPRGENQ PNDAREEAAL VGVSRRPLSK PAGLACHNIS  240
TKKGMKTIID DDDKESSLSP SPSGPLSHVE AERQRRDKMN QRFYALRSVV PNVSRMDKAS  300
LLADAVDYIK ELRSRIDALE SKLVKSEPPS PKRHKSKRAV ADGTETTSLS SKNSSTMVAR  360
TLAIPGPREM TVEVTVVGRE AVVRVWSPNL EHPCARLMDV LKELGLVVQH ASMSCVKGMM  420
LQDVVIRTPV ECLVSDESIR DAIRGKLGEV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A9e-23151942192Transcription factor MYC3
4rqw_B9e-23151942192Transcription factor MYC3
4rs9_A9e-23151942192Transcription factor MYC3
4yz6_A9e-23151942192Transcription factor MYC3
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.E01049.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010058370.10.0PREDICTED: transcription factor MYC2
TrEMBLA0A059C2W20.0A0A059C2W2_EUCGR; Uncharacterized protein
STRINGXP_010058370.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30392163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.14e-41bHLH family protein