PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.E01045.1.p
Common NameEUGRSUZ_E01045, LOC104446166
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 454aa    MW: 50166.1 Da    PI: 8.0835
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.E01045.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.94.1e-14267313455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +h e+Er+RR+++N+++  Lr+++P+       +++Ka+ L  Av+YIk+Lq
  Eucgr.E01045.1.p 267 SHVEAERQRREKMNQRLYALRSVVPNV-----SRMDKASLLVDAVDYIKELQ 313
                       799***********************6.....4******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.1E-3729194IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.619263312IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.88E-17266324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-16267325IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-11267313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.98E-14268313No hitNo description
SMARTSM003531.4E-15269318IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MEELTYRASS SLVVPLSHNA LPTLQQLVPL ILQTRPEDWV YSIFWRPSID DHGRLVLTWG  60
DGHFRGTTRD PFPSKPTTKR VLKEAQCPGG KLTPGSDIDD PEWYYIFSVT RSYSSEDGIL  120
GRAFRSGGHI WLSGENRHEL EMYECDERVK EARMHGIQSI VCISVPNGSG VLELGSSEII  180
KEDRSLVQLA KSQFPSHLMN LRINPRGENP SNDAKGEPAL VVASKRPYAK SVGVVHHNIS  240
KESCRKKIVD EDIKESPPSP SLSGPLSHVE AERQRREKMN QRLYALRSVV PNVSRMDKAS  300
LLVDAVDYIK ELQSRIAELD SKLAKSERPS PKRLKTETDV ASFGDAGVTT SRSSKNSSTT  360
AVTTPDVPGL REMAVEVKVL GQEAVVRVRS PNLGHPCARL MDVLKELGSA VQHASMSCVE  420
GMMIQDVVIR TPVDCWVSDE SIRDAIRGKL GKG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A1e-20231948192Transcription factor MYC3
4rqw_B1e-20231948192Transcription factor MYC3
4rru_A3e-202318847225Transcription factor MYC3
4rs9_A1e-20231948192Transcription factor MYC3
4ywc_A3e-202318847225Transcription factor MYC3
4ywc_B3e-202318847225Transcription factor MYC3
4yz6_A1e-20231948192Transcription factor MYC3
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.E01045.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010058366.10.0PREDICTED: transcription factor MYC4
TrEMBLA0A059C3170.0A0A059C317_EUCGR; Uncharacterized protein
STRINGXP_010058366.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30392163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.12e-57bHLH family protein