PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.E00624.1.p
Common NameEUGRSUZ_E00624
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 564aa    MW: 62779.6 Da    PI: 5.2095
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.E00624.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.75.7e-10365410555
                       HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                       h   E r R++iN+ f+ L ++lP  +      K++K++iL  ++eY+k+Lq
  Eucgr.E00624.1.p 365 HTLSESRQREKINEQFSVLNSILPLvN------KVDKISILDNTIEYVKELQ 410
                       7888999******************55......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142158.4E-3614139IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088813.541360409IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.45E-13365420IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-13365419IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-7365410IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.47E-9365414No hitNo description
SMARTSM003532.4E-9366415IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 564 aa     Download sequence    Send to blast
MTQAIELNGG DHMDLHRSEQ LRELYESLSG SEPNPQTSRR PSVALSPEDL ADAEWYYLVC  60
MSFIFNIGQC LPGQSLATGK LIWLCNAHCA DSKVFSRSLL AKSASIQTVV CFPFLDGVIE  120
LGTTDPVLED PNLIQHVKTY LLESSDLRRS DPCARDNTEE TIMISVEAEE GITSLNPNSN  180
GLDPNPQLDD SCIIGELYGV ASQIQSWQIK NDELSYHIHQ SGNSKDSTSQ SFLETGTAIP  240
IPNFEKSKDH WPGNLQECNN EELNRVDLRA DGLHYQTALS SILKTSNGLR SGPHREWGEP  300
ESGFIGWKKG QHKWQRAKGV PQMLLKKILL EVPQLHARSM LDISKVSCKR DGLWMALTDE  360
LSPDHTLSES RQREKINEQF SVLNSILPLV NKVDKISILD NTIEYVKELQ RRAEELESSR  420
TSNGLLAISE GKPQESTERT SDNCGNPRTG LSKQPIVKKR KAHNCGTTET DNDYLRDIPI  480
DYLSVSVNDE DVLIEMRCLW REGVLLEIIE ALSHSRLDSH SVQSLSSNGI LSVTIKCKLQ  540
RSTTTKTTAA TIKQALQGVA QNC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.E00624.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018729602.10.0PREDICTED: transcription factor GLABRA 3 isoform X1
RefseqXP_018729603.10.0PREDICTED: transcription factor GLABRA 3 isoform X1
RefseqXP_018729604.10.0PREDICTED: transcription factor GLABRA 3 isoform X1
TrEMBLA0A059C1170.0A0A059C117_EUCGR; Uncharacterized protein
STRINGXP_010055649.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25922867
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41315.11e-134bHLH family protein