PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.E00472.1.p
Common NameEUGRSUZ_E00472, LOC104443725
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 383aa    MW: 43537.5 Da    PI: 8.761
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.E00472.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.00024134157123
                       EEETTTTEEESSHHHHHHHHHH.T CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                       y C  Cg+ F +++ L +H +  H
  Eucgr.E00472.1.p 134 YLCRVCGRKFYTNEKLINHFKQiH 157
                       56*****************88766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.10106.1E-951137IPR029060PIN domain-like
SuperFamilySSF576674.82E-5131160No hitNo description
PROSITE profilePS5015711.843134162IPR007087Zinc finger, C2H2
PROSITE patternPS000280136157IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.0E-4138159IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
CDDcd061673.87E-11190275No hitNo description
PfamPF019361.6E-8194285IPR021139NYN domain, limkain-b1-type
Gene3DG3DSA:3.40.50.10106.1E-9219274IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005739Cellular Componentmitochondrion
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MVVHMKIRGI CCFANFGKLD ALKYTYTAFA RYCHSEPLGV TSTYLEPSPS SSNKNSVAIF  60
WDLDNKPPNS FPPFDAAIKL KASASSFGVV QYMVAYANRH AFSYVPPDVR EQRKERKVLN  120
KLENKGVIRP MEPYLCRVCG RKFYTNEKLI NHFKQIHERE HTKRVSQIES TRGKRRVNLV  180
AKYSMKMEKY KNSARDVLTP KVGYGLAGEL KRAGFFVNMV SDKPQAADIA LRNNIVDVMD  240
KRKADCLVLV SDDSDFVDIL KEAKMRCLRT VVVGDINDGP LKRTADVGFS WRDILMGKAK  300
KEAASVVGRW NDRDILKRLE WTYNPEVDRK MSDYFDESEG QDFEDSDGGV DGDFIEKDNT  360
RAWWDLDSDD EVASSQASHQ SS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.E00472.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010055539.10.0PREDICTED: uncharacterized protein LOC104443725
RefseqXP_010055540.10.0PREDICTED: uncharacterized protein LOC104443725
RefseqXP_018730100.10.0PREDICTED: uncharacterized protein LOC104443725
RefseqXP_018730101.10.0PREDICTED: uncharacterized protein LOC104443725
TrEMBLA0A059C0Y70.0A0A059C0Y7_EUCGR; Uncharacterized protein
STRINGXP_010055539.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM114442833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12240.11e-140C2H2 family protein