PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.E00315.1.p
Common NameEUGRSUZ_E00315, LOC104443582
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB_related
Protein Properties Length: 331aa    MW: 35832.7 Da    PI: 9.8631
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.E00315.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding254.4e-08267309343
                       SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHH CS
   Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksr 43 
                        W+  Ed  l++a k ++++   +W++Ia+ ++ g+t  +c+ r
  Eucgr.E00315.1.p 267 EWSSGEDIALLNALKAFPKDapmRWEKIAAAVP-GKTKVDCVKR 309
                       7********************************.*******988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500905.297171207IPR017877Myb-like domain
SMARTSM007179.7E-5175228IPR001005SANT/Myb domain
SuperFamilySSF466895.69E-6177228IPR009057Homeodomain-like
CDDcd001670.00346179225No hitNo description
PROSITE profilePS500907.015260314IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.5E-6263316IPR009057Homeodomain-like
SMARTSM007175.3E-7264316IPR001005SANT/Myb domain
SuperFamilySSF466894.68E-10264313IPR009057Homeodomain-like
CDDcd001672.03E-6267309No hitNo description
PfamPF002491.5E-6267309IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0005783Cellular Componentendoplasmic reticulum
GO:0005886Cellular Componentplasma membrane
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MEFVDEGRPR FLFQARANPP PPPPPPSSSS SSSSPSAAGQ WRLPNKPFLV ATTALSAVLI  60
SLALLYVPSE PSRSLLLWLS LSLLVGPFAP SSLTGGSVRV GHGPVVEFPD PQQPPAGEDA  120
KKKPSQKRPK GQPPGNNAVV SPPIAEIDGR LGKKSEGNGV AIQGKSDLGF REKEKENDWS  180
EDEIELLRKQ LVKHPAGKPR RWEIIAEAFN GAHGVESVIK KAKELADKKS SDKDSYAQFL  240
KNRKPLDERL NEEADGNGGG EVRRESEWSS GEDIALLNAL KAFPKDAPMR WEKIAAAVPG  300
KTKVDCVKRV SELKKDFRSS KAAKEGQMEE *
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of root hair development, possibly through auxin signaling. Its endoplasmic reticulum membrane localization is not compatible with its transcription factor activity in the nucleus. May be cleaved to target the nucleus. {ECO:0000269|PubMed:21477080}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.E00315.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21477080}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010055375.10.0PREDICTED: dnaJ homolog subfamily C member 2
RefseqXP_010055376.10.0PREDICTED: dnaJ homolog subfamily C member 2
SwissprotQ9ASQ24e-81MAMYB_ARATH; Transcription factor MAMYB
TrEMBLA0A059C0T40.0A0A059C0T4_EUCGR; Uncharacterized protein
STRINGXP_010055375.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM126921011
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45420.13e-79MYB_related family protein