PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.E00253.1.p
Common NameEUGRSUZ_E00253, LOC104443525
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family HSF
Protein Properties Length: 519aa    MW: 56474.6 Da    PI: 4.469
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.E00253.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.72.9e-36391302102
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                       Fl+k+y++++d+++++++sws+++nsfvv+++ efa+++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+ll
  Eucgr.E00253.1.p  39 FLSKTYDMVDDPATDSIVSWSATNNSFVVWKPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKHLL 122
                       9********************999*****************************************999.........**************** PP

                       XXXXXXXX CS
      HSF_DNA-bind  95 ekikrkks 102
                       ++i r+k 
  Eucgr.E00253.1.p 123 KSISRRKP 130
                       *****985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.6E-4030123IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.02E-3534128IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.6E-6335128IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.2E-3239128IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.3E-203962IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.3E-207789IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434078102IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.3E-2090102IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 519 aa     Download sequence    Send to blast
MDGAGDDGAG GASKQSNAPA AAPTPAPAPM SSANAPPPFL SKTYDMVDDP ATDSIVSWSA  60
TNNSFVVWKP AEFARDLLPK YFKHNNFSSF VRQLNTYGFR KVDPDRWEFA NEGFLRGQKH  120
LLKSISRRKP VHGQGSQQPQ QPPGQSSSVG ACVEVGKFGL EEEVERLKRD KNVLMTELVR  180
LRQQQQATDG QLQTMVQRLH GMEQRQQQMM SFLAKAVQSP GFFAQFVQQQ NESNRRIAEV  240
NKKRRLRRDG LSENEHTAAS DGQIVKYQPP INETAKALFR QMMKVEAPQQ ESFDDSPESF  300
LLGDGSSLSS GMDSRTSSRI SGVTLQEVPP TSSQVPEIPP ALGASANDPS SAVSELKAPS  360
QGTAKVTTNQ FPDMGMLAGA QESEAVSVNQ ADTVMTGISQ TQDMVLEDIA NISRDDYMGA  420
DLHNGDYMDP ASFMNGSMPI EIDSISPDPD IDALLESSTF WDDLLMQNLL PEEGESTSAE  480
AHAGANDAQP MENGWDKAEH VDQLTEQMGL LASDNKGI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A5e-273012811120Heat shock factor protein 1
5d5u_B5e-273712827129Heat shock factor protein 1
5d5v_B5e-273712827129Heat shock factor protein 1
5d5v_D5e-273712827129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.E00253.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010055283.10.0PREDICTED: heat shock factor protein HSF8 isoform X1
SwissprotQ401521e-174HSF8_SOLLC; Heat shock factor protein HSF8
TrEMBLA0A059C0550.0A0A059C055_EUCGR; Uncharacterized protein
STRINGXP_010055283.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM64702440
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32330.11e-131heat shock transcription factor A1D
Publications ? help Back to Top
  1. Zhu B, et al.
    Identification and characterization of a novel heat shock transcription factor gene, GmHsfA1, in soybeans (Glycine max).
    J. Plant Res., 2006. 119(3): p. 247-56
    [PMID:16570125]
  2. Cai SY, et al.
    HsfA1a upregulates melatonin biosynthesis to confer cadmium tolerance in tomato plants.
    J. Pineal Res., 2017.
    [PMID:28095626]
  3. Zhou J, et al.
    Heat Shock Factor HsfA1a Is Essential for R Gene-Mediated Nematode Resistance and Triggers H2O2 Production1.
    Plant Physiol., 2018. 176(3): p. 2456-2471
    [PMID:29339397]