PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.E00139.1.p
Common NameEUGRSUZ_E00139
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family BES1
Protein Properties Length: 700aa    MW: 77951.6 Da    PI: 5.6258
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.E00139.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822144.59.7e-45742121132
            DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyr...kgskpl...eeaeaagssas 87 
                       gg++r+++ +E+E++k+RER+RRai+a+i+aGLR++Gny+l++raD+n+V++AL+reAGwvv +DGtt++   +gskp    ++a +  ss+ 
  Eucgr.E00139.1.p  74 GGARRSRPLEEKERTKLRERHRRAITARILAGLRRHGNYNLRVRADINDVIAALAREAGWVVLPDGTTFPsrsQGSKPIsgtSAAVTPPSSEM 166
                       6899*****************************************************************988899999975445555567777 PP

            DUF822  88 aspesslq.sslkssalaspvesysaspksssfpspssldsislas 132
                       + ++++l+ ++  ss   spv+  ++++k + +p +s +ds s  +
  Eucgr.E00139.1.p 167 VLQQAPLTsLRGISSGYGSPVDYNASRMKGVYVPNSSPYDSSSRGQ 212
                       8999999888999***************************987653 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056878.4E-3976207IPR008540BES1/BZR1 plant transcription factor, N-terminal
SuperFamilySSF514452.34E-177258693IPR017853Glycoside hydrolase superfamily
Gene3DG3DSA:3.20.20.805.6E-194260695IPR013781Glycoside hydrolase, catalytic domain
PfamPF013736.7E-105266683IPR001554Glycoside hydrolase, family 14
PRINTSPR007504.0E-69297311IPR001554Glycoside hydrolase, family 14
PRINTSPR007504.0E-69318336IPR001554Glycoside hydrolase, family 14
PRINTSPR007504.0E-69340361IPR001554Glycoside hydrolase, family 14
PROSITE patternPS005060344352IPR018238Glycoside hydrolase, family 14, conserved site
PRINTSPR008421.1E-6423432IPR001371Glycoside hydrolase, family 14B, plant
PRINTSPR007504.0E-69433455IPR001554Glycoside hydrolase, family 14
PRINTSPR007504.0E-69506525IPR001554Glycoside hydrolase, family 14
PRINTSPR007504.0E-69540556IPR001554Glycoside hydrolase, family 14
PRINTSPR007504.0E-69557568IPR001554Glycoside hydrolase, family 14
PRINTSPR007504.0E-69575598IPR001554Glycoside hydrolase, family 14
PRINTSPR008421.1E-6578588IPR001371Glycoside hydrolase, family 14B, plant
PRINTSPR007504.0E-69614636IPR001554Glycoside hydrolase, family 14
PRINTSPR008421.1E-6665679IPR001371Glycoside hydrolase, family 14B, plant
PRINTSPR008421.1E-6680694IPR001371Glycoside hydrolase, family 14B, plant
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0048831Biological Processregulation of shoot system development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 700 aa     Download sequence    Send to blast
MATDMQRLVG TSEDEDEEDI EMDVKEEDDD EDDDMEKHIA TPPLVGVDGL MGSSSNNSRF  60
HHPQIHEQGS NPGGGARRSR PLEEKERTKL RERHRRAITA RILAGLRRHG NYNLRVRADI  120
NDVIAALARE AGWVVLPDGT TFPSRSQGSK PISGTSAAVT PPSSEMVLQQ APLTSLRGIS  180
SGYGSPVDYN ASRMKGVYVP NSSPYDSSSR GQSQISSALG DGGEPLNTQA IIGGSVESVD  240
AKQVIVDVPS KLPERDFAAT PYIPVYVMLP LGVINVKSEL VDPDGLLKQL RILKSLNVDG  300
VTVDCWWGVV EAHAPQEYNW NGYRRLFQMV HELKFKLQVI MSFHECGGNV GDDVCIPLPH  360
WVAEIGRSNP DIFFTDREGR RNPECLSWGI DKERVLRGRT AVEVYFDYMR SFRAEFNDYF  420
EDGIISMIGI GLGPCGELRY PSNPVKNGWR YPGIGEFQCY DQYLLKNLRK AAEARGQAFW  480
ARGPDNAGSY NSQPQETGFF CDGGDYDGYF GRFFLKWYSQ VLIDHGDRVL ALAKLAFDGT  540
CIAAKLSGIY WWYRTASHAA ESTAGFYNPS NRDGYATIAA MLKKHGAALN FTCAQLHVLD  600
QQDFSSALAD PDGLAWQVLN AAWDHGIPVI GENFLPCHTR VGYNKMLDGA KLLNDPDGRH  660
FLSFTYLRLN SILMERQNLL EFERFVKRMH GEAVRDLQQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1q6d_A1e-14926269211444beta-amylase
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.E00139.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010055132.10.0PREDICTED: beta-amylase 7 isoform X3
SwissprotO808310.0BAM7_ARATH; Beta-amylase 7
TrEMBLA0A059BZQ40.0A0A059BZQ4_EUCGR; Beta-amylase
STRINGXP_010055132.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29452535
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45880.10.0beta-amylase 7
Publications ? help Back to Top
  1. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]