PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.E00019.1.p
Common NameEUGRSUZ_E00019, LOC104443332
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 496aa    MW: 54240.4 Da    PI: 6.31
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.E00019.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.22.7e-12324369454
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       +h e+Er+RR+++N++f  Lr ++P+       +++Ka+ L  Av YI++L
  Eucgr.E00019.1.p 324 NHVEAERQRREKLNHRFYALRAVVPNV-----SRMDKASLLSDAVSYINEL 369
                       799***********************6.....4***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.2E-5033209IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.015320369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-17321384IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.71E-14323373No hitNo description
PfamPF000107.3E-10324369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-16324387IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-15326375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048736.90E-4442495No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MEELIISPSS SPSLASKSMS PTATPPPSLS LTLQQRLQLM VQSQPQWWAY AIFWQLLNHD  60
DGRLLLAWGD GHFQGSTKLT LASRSDRRRL LQALPRDPSN SRPDAAADVP LPAPAGDVTD  120
AEWFYVMSLT RSFSAGDGIP GKALSTGSLV WLTGARELES YKCDRAKEAE LHGIRTMVCI  180
PTGDGVLELG SCDVIPENWG LVQRAKSLFG SDLLLPKHPP PPPPPFQLHH DHSDISFADI  240
GIIAGVQEND FAPHDDHEKK VKKKQPLVEG AGGKPEAPFG CSSYLVESEH SDSDSPFMAA  300
VMTEKRTPKK RGRKPGLGRD TPLNHVEAER QRREKLNHRF YALRAVVPNV SRMDKASLLS  360
DAVSYINELK SKIGDLESQL QRESKRVKQE VTDATDNLST TTSVDHSSPS GCGGSLLEVE  420
VKIVGCDAMI RVQSENANYP SARLMAAMRD LELHIHHASL STVNDLMLQD VVVSVPEGLK  480
GEEDLRAALL RALEQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A2e-37322098192Transcription factor MYC3
4rqw_B2e-37322098192Transcription factor MYC3
4rs9_A2e-37322098192Transcription factor MYC3
4yz6_A2e-37322098192Transcription factor MYC3
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.E00019.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010054972.10.0PREDICTED: transcription factor MYC2
TrEMBLA0A059BZD60.0A0A059BZD6_EUCGR; Uncharacterized protein
STRINGXP_010054972.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30392163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32640.17e-49bHLH family protein