PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.D02651.5.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | MYB_related | ||||||||
Protein Properties | Length: 577aa MW: 62946.6 Da PI: 6.3594 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.4 | 5.3e-16 | 24 | 68 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT++E+ ++++a k++G W +I +++g ++t+ q++s+ qk+ Eucgr.D02651.5.p 24 RERWTEDEHNRFLEALKLHGRA-WQRIEEHIG-TKTAVQIRSHAQKF 68 78******************88.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.5E-16 | 18 | 74 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 20.553 | 19 | 73 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.6E-8 | 21 | 70 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 6.9E-16 | 22 | 71 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 2.5E-12 | 23 | 71 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.2E-13 | 24 | 67 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.36E-9 | 26 | 69 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0042754 | Biological Process | negative regulation of circadian rhythm | ||||
GO:0043433 | Biological Process | negative regulation of sequence-specific DNA binding transcription factor activity | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0048574 | Biological Process | long-day photoperiodism, flowering | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 577 aa Download sequence Send to blast |
MDTYSSGEDL IVKTRKPYTI TKQRERWTED EHNRFLEALK LHGRAWQRIE EHIGTKTAVQ 60 IRSHAQKFFS KLEKEAIVKG VPVGQTLDIK IPPPRPKRKP SNPYPRKTGA STPTLSVGAK 120 DGGILSVSPS NCEKLDSETA SFLEEAHCSS ISSTNRSVVP TPVGIQNSCT FRMFVPSLKE 180 GVQDNGPRKV SNSENSDRSH EKSVQCRMDG YDGPPADEMQ TAHNFPRHVP VHVLDANHTK 240 CTQAPLQDVS FQDSAFDPTG EVKARLNLFP NQTPSAAGEN QKEAPRMDHQ SFPAFHPPFT 300 PVHHNEDDYR SFLHLSSTFS SLIVSTLLQN PAAHVAASFA ASLWPYPNVE NSVVDSAVCT 360 QGTFPCRPSS SPPSMAALAA ATVAAATAWW AAHGLLPLCA PLHTGFTCNP TSATAVHSLN 420 TSQTPGVEKE RRECTFENPC SQEHLDPEHS EALQAQNSAS KSPLGALSDS EDSGGARLDT 480 RSKAADHEKA AVETDSQQNQ SKGGKPVDRS SCGSNTPSSS EVETDALEKQ EKGNETLKDP 540 DPNQSILEYF NRRCRSTSNV TDSWKEVSEE VRDVDF* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00119 | DAP | Transfer from AT1G01060 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.D02651.5.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010054138.1 | 0.0 | PREDICTED: protein LHY isoform X1 | ||||
Refseq | XP_010054139.1 | 0.0 | PREDICTED: protein LHY isoform X1 | ||||
TrEMBL | A0A059CJX7 | 0.0 | A0A059CJX7_EUCGR; Uncharacterized protein (Fragment) | ||||
STRING | XP_010054137.1 | 0.0 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01060.4 | 9e-91 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.D02651.5.p |