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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.D02651.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | MYB_related | ||||||||
Protein Properties | Length: 730aa MW: 79749.2 Da PI: 6.5094 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.9 | 7.1e-16 | 24 | 68 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT++E+ ++++a k++G W +I +++g ++t+ q++s+ qk+ Eucgr.D02651.1.p 24 RERWTEDEHNRFLEALKLHGRA-WQRIEEHIG-TKTAVQIRSHAQKF 68 78******************88.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.09E-16 | 18 | 74 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 20.553 | 19 | 73 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.7E-8 | 21 | 70 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 9.3E-16 | 22 | 71 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 2.5E-12 | 23 | 71 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.3E-13 | 24 | 67 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.77E-9 | 26 | 69 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0042754 | Biological Process | negative regulation of circadian rhythm | ||||
GO:0043433 | Biological Process | negative regulation of sequence-specific DNA binding transcription factor activity | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0048574 | Biological Process | long-day photoperiodism, flowering | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 730 aa Download sequence Send to blast |
MDTYSSGEDL IVKTRKPYTI TKQRERWTED EHNRFLEALK LHGRAWQRIE EHIGTKTAVQ 60 IRSHAQKFFS KLEKEAIVKG VPVGQTLDIK IPPPRPKRKP SNPYPRKTGA STPTLSVGAK 120 DGGILSVSPS NCEKLDSETA SFLERASGGE KLANSKENQD DNCSEVFNLP QEAHCSSISS 180 TNRSVVPTPV GIQNSCTFRM FVPSLKEDNG PRKVSNSENS DRSHEKSVQC RMDGYDGPPA 240 DEMQTAHNFP RHVPVHVLDA NHTKCTQAPL QDVSFQDSAF DPTGEVKARL NLFPNQTPSA 300 AGENQKEAPR MDHQSFPAFH PPFTPVHHNE DDYRSFLHLS STFSSLIVST LLQNPAAHVA 360 ASFAASLWPY PNVENSVVDS AVCTQGTFPC RPSSSPPSMA ALAAATVAAA TAWWAAHGLL 420 PLCAPLHTGF TCNPTSATAV HSLNTSQTPG VEKERRECTF ENPCSQEHLD PEHSEALQAQ 480 NSASKSPLGA LSDSEDSGGA RLDTRSKAAD HEKAAVETDS QQNQSKGGKP VDRSSCGSNT 540 PSSSEVETDA LEKQEKGNET LKDPDPNQSI LEYFNRRCRS TSNVTDSWKE VSEEGRLAFQ 600 ALFSRNVLPQ SFSPPRDMKN KGQQKENVEE GEQNNGEVDK DVSTLDLNRN MCISCSFHQG 660 PERSGVINGG EEGLLTIGLG QGKLRTHRTG FKPYKRCSVE AKETRAANVG SQSEEQGPKR 720 IRLEGEPSM* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00119 | DAP | Transfer from AT1G01060 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.D02651.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010054141.1 | 0.0 | PREDICTED: protein LHY isoform X2 | ||||
TrEMBL | A0A059CKT4 | 0.0 | A0A059CKT4_EUCGR; Uncharacterized protein (Fragment) | ||||
STRING | XP_010054137.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5576 | 26 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01060.4 | 1e-121 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.D02651.1.p |