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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.D02541.1.p | ||||||||
Common Name | EUGRSUZ_D02541 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | Trihelix | ||||||||
Protein Properties | Length: 529aa MW: 58088.2 Da PI: 4.8463 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 106.3 | 2.1e-33 | 248 | 333 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k ev aLi++r+ +e+r++++ k+plWee+s+ m++ g++rs+k+Ckekwen+nk++kk+ke++kkr +e+ +tcpyf++l+a Eucgr.D02541.1.p 248 RWPKVEVIALIKLRSGLESRYQEAGPKGPLWEEISAGMARMGYKRSAKRCKEKWENINKYFKKVKESNKKR-PEDAKTCPYFHELDA 333 8*********************************************************************8.99999********85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.69 | 241 | 305 | IPR017877 | Myb-like domain |
Pfam | PF13837 | 2.3E-23 | 247 | 334 | No hit | No description |
CDD | cd12203 | 7.16E-29 | 248 | 312 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 529 aa Download sequence Send to blast |
MSASPMGMIF SSNSSSSSGR SEEDDDDEED EEEGEPSTTG SSRKRKRGPG ETSGSGGGSR 60 RKMMELFEGL MRQVMQKQEE MQKRFFEAIE KREQDRLIRE EAWRRQEMNR LARENEIAAQ 120 ERAASASRDA AIVSFLQKIT GQTIHLPTMP ATMLATVTTS VPPLSQTPLP KTQVRPTHAA 180 PHPQPPMPPP PTYQEQPQQQ RQNIEVVTHP LPASTGIIMA VPEQQVPPRS QELILSGGSG 240 GEPSSSSRWP KVEVIALIKL RSGLESRYQE AGPKGPLWEE ISAGMARMGY KRSAKRCKEK 300 WENINKYFKK VKESNKKRPE DAKTCPYFHE LDALYRKKEL GGGGGGATSG TAATSGSMGF 360 RAEPSPSTAN LEARPVIAQD QPPPPPPPPA AAPAQAGEPE RKDGGDNSGA QERTVEEGNG 420 GSLKKPEDTV KELIGQGQHQ NQHLDSDQQH LRVNSGNYND KKMEEGDSDN IEDQEENELE 480 EDDEENEEDE ELEEERKMAY KIEFQRPNAS APPNGGGNGA PSFLAMVQ* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.D02541.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF573526 | 7e-42 | KF573526.1 Lilium hybrid cultivar Sorbonne LS-ZJU02 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010054910.2 | 0.0 | PREDICTED: trihelix transcription factor GTL1, partial | ||||
TrEMBL | A0A059CIU7 | 0.0 | A0A059CIU7_EUCGR; Uncharacterized protein | ||||
STRING | XP_010054910.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6226 | 27 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G28300.1 | 4e-49 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.D02541.1.p |