PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.D02498.1.p
Common NameEUGRSUZ_D02498
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 537aa    MW: 60058 Da    PI: 7.0988
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.D02498.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.80.00037133149319
                       ETTTTEEESSHHHHHHH CS
           zf-C2H2   3 CpdCgksFsrksnLkrH 19 
                       C++Cgk Fs++ ++  H
  Eucgr.D02498.1.p 133 CENCGKEFSSWKSFLEH 149
                       **************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0035556183IPR015880Zinc finger, C2H2-like
PfamPF139123.7E-46183IPR007087Zinc finger, C2H2
SuperFamilySSF576675.23E-56183No hitNo description
PROSITE patternPS0002806383IPR007087Zinc finger, C2H2
SuperFamilySSF576675.23E-5126150No hitNo description
SMARTSM00355240131151IPR015880Zinc finger, C2H2-like
SuperFamilySSF576679.91E-7274297No hitNo description
SMARTSM003550.13275297IPR015880Zinc finger, C2H2-like
PfamPF139121.6E-9275299IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.076275302IPR007087Zinc finger, C2H2
PROSITE patternPS000280277297IPR007087Zinc finger, C2H2
SuperFamilySSF576679.91E-7352379No hitNo description
PfamPF139122.9E-13356380IPR007087Zinc finger, C2H2
SMARTSM003550.44357379IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.369357379IPR007087Zinc finger, C2H2
PROSITE patternPS000280359379IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 537 aa     Download sequence    Send to blast
THLHPHPRHL LHHHPSSALR FRFFFSSSPS PPFSFWFASL LRIDRVLLMA LIVDQQLNFK  60
HFCKICKKGF MCGRALGGHM RAHGIGDEGG HTDDEDPGSN WEDKNIGDNV PPSSKRMYGL  120
RANPNRLKSC RACENCGKEF SSWKSFLEHG KCGAGSEDVG DSYSSSPESE DEEDGVSRRR  180
GCKWSKRKRS LRVKVDNANS NCPSSEEEDL ANCLMMLSNG MVDPSSAEPE ESCASASKDE  240
ERRRPISFIA PLAFRSPPTT DKAKGVIPNK GQGLFECKAC KKVFNSHQAL GGHRASHKKV  300
KGCFAARVDH AYDWVPDEDA ITQDEFFMTK SMASNSPFDH GLSSSLPSTS KRKSKVHECS  360
ICHRVFSSGQ ALGGHKRCHW ITSNPADAPA LAKLQHLHEQ MEQIQQMPDK FIDPDDPLNL  420
KLDLNLPAPS DDLRRDPMHS PTTRFARVSA EMYLQSWLGL HPKESEHNNQ HMEENDFNSN  480
KNDNEKNNNM DNNYNDDSNI ATTHSAVDDE AESKVKLAKL SELKDVNMSG GSSSWLQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.D02498.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010053943.10.0PREDICTED: zinc finger protein ZAT4
TrEMBLA0A059CJ920.0A0A059CJ92_EUCGR; Uncharacterized protein (Fragment)
STRINGXP_010053943.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13535616
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.18e-25C2H2-like zinc finger protein