PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.D02287.1.p
Common NameEUGRSUZ_D02287, LOC104442098
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 645aa    MW: 72203.8 Da    PI: 4.7395
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.D02287.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.70.00054674981955
                       HHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
               HLH  19 afeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                       +f  Lr+++P+          +Ka+iL  ++ Y+++L+
  Eucgr.D02287.1.p 467 KFLVLRSMIPSiE------EIDKASILDDTIMYLRELE 498
                       7889*******55......8***************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142154.9E-5515195IPR025610Transcription factor MYC/MYB N-terminal
SMARTSM003530.0083457503IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.88E-4462502No hitNo description
SuperFamilySSF474592.75E-7463511IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-7466510IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 645 aa     Download sequence    Send to blast
MATGVEGNEG VPANLRKQLA VAVRSIQWSY AIFWTLSATK QGVLQWGDGY YNGDIKTRKT  60
VQAVELKPDK IGLQRSEQLR DLYESLLEGE TDAQNKRPSA ALSPEDLTDE EWYYLVCMSF  120
VFNPGEGLPG RALADGQTIW LCNAQYADSK VFSRSLLAKS ASIQTVVCFP YLGGVIELGV  180
TELVPEDPSL LQHIKVSLLD FSKPICSEKS SSIPQNGDAD KEPMCAKVDC GMVDELVLEN  240
LYSPAQEIKF DPEKISEFCE SIPKELDMDS PDECSNGCEH NYQTEDSFMV DGMNGGASQV  300
QSWHFVDDDF SNGVQGSINS SDCISEAIVN QDKYISSPRR ENAKNSHLKE LQECNHSKLS  360
SLDLGPDDIS HYRRTISAVL RNPDQLPETR CICSCGCKSS FLRWRMVEVH KPRAHQETLK  420
KILFEVPLMH RGQALKSELQ NGVESLLGDV DFCAGHILST KKKEHEKFLV LRSMIPSIEE  480
IDKASILDDT IMYLRELEAR VEELESCMDS TDLEGKVTRK KFPDMIEQTS DNCKKRWINK  540
RKASDIDETD AELDRNAQGD GLQTDVKVNI KEQEVSIEMK CPYREYLLLD ILEAVNNLHL  600
DAYSIQSSTL DGVLKLTLKS KFRGAAVSPA GMVKQVLWKI TGKY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rru_A2e-161519448227Transcription factor MYC3
4ywc_A2e-161519448227Transcription factor MYC3
4ywc_B2e-161519448227Transcription factor MYC3
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.D02287.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010053704.10.0PREDICTED: transcription factor EGL1
TrEMBLA0A059CIL20.0A0A059CIL2_EUCGR; Uncharacterized protein
STRINGXP_010053704.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25922867
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63650.31e-160bHLH family protein