PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.D01935.2.p
Common NameEUGRSUZ_D01935, LOC104441811
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family TALE
Protein Properties Length: 310aa    MW: 34233.5 Da    PI: 6.7556
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.D01935.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.11.2e-072582912154
                       HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
          Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                       k +yp+++++++L +++gL+ +q+ +WF N+R +
  Eucgr.D01935.2.p 258 KWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 291
                       469*****************************87 PP
2ELK25.14.2e-09212233122
               ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                       ELK +L++++++++ ++++E++
  Eucgr.D01935.2.p 212 ELKIELKQGFRSKIEDVREEIL 233
                       9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.1E-194387IPR005540KNOX1
PfamPF037902.7E-174586IPR005540KNOX1
SMARTSM012566.9E-25101156IPR005541KNOX2
PfamPF037912.7E-18104155IPR005541KNOX2
PROSITE profilePS512139.097212232IPR005539ELK domain
PROSITE profilePS5007111.693232295IPR001356Homeobox domain
SuperFamilySSF466893.94E-16234299IPR009057Homeodomain-like
SMARTSM003896.9E-11234299IPR001356Homeobox domain
CDDcd000861.29E-11235296No hitNo description
Gene3DG3DSA:1.10.10.603.8E-25239297IPR009057Homeodomain-like
PfamPF059201.1E-17252291IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010089Biological Processxylem development
GO:0010192Biological Processmucilage biosynthetic process
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MQEPNLAMMG GGGGGGGGGG GIVGGGGGGL GSEASFSGDH PQRQLKGEIA SHPMYEQLLS  60
AHVACLRVAT PIDQLPLIDA QLAQSHHLLR SYASSVQHGH SSLSPHDRQE LDNFLAQYLV  120
VLCSFKEQLQ QHVRVHAVEA VMACREIENT LQALTGMSLG EGTGATMSDD EDELQMDFSL  180
DQSGADVHDL MGFGPLLPTE SERTLMERVR HELKIELKQG FRSKIEDVRE EILRKRRAGK  240
LPGDTTSVLK NWWQQHSKWP YPTEDDKAKL VEETGLQLKQ INNWFINQRK RNWHNNSQSV  300
TSLKSKRKR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1288308RKRNWHNNSQSVTSLKSKRKR
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in secondary cell wall biosynthesis. {ECO:0000269|PubMed:15980264}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.D01935.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010053355.10.0PREDICTED: homeobox protein HD1
SwissprotQ9FPQ81e-169KNAT7_ARATH; Homeobox protein knotted-1-like 7
TrEMBLA0A059CHH50.0A0A059CHH5_EUCGR; Uncharacterized protein
STRINGXP_010053355.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62990.11e-169KNOTTED-like homeobox of Arabidopsis thaliana 7
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. He JB, et al.
    KNAT7 positively regulates xylan biosynthesis by directly activating IRX9 expression in Arabidopsis.
    J Integr Plant Biol, 2018. 60(6): p. 514-528
    [PMID:29393579]