PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.D01917.1.p
Common NameEUGRSUZ_D01917, LOC104441797
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRAS
Protein Properties Length: 673aa    MW: 75085.3 Da    PI: 6.0706
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.D01917.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS406.23.3e-1242896561373
              GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                       lv+lL++c+ea+ s++   +++++a+l ++asp+g+++ R++ay+teALa r++r +++++++ +p+e + +  +++ +al+l+++vsPi+kf
  Eucgr.D01917.1.p 289 LVSLLTACVEAIGSKNIPVINHFIAKLGDHASPRGSTISRVIAYYTEALALRVTRLWPHVFHITTPREVD-RVDEDSGMALRLLNQVSPIPKF 380
                       6899***********************************************************9999998.4567778999************ PP

              GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrl 186
                        h+t N+ +l+a+eg++rvHiiDfdi+qGlQWp+L+q+LasR+++p ++RiTg+g+    sk+el etg+rLa fA ++++pfef++ v++rl
  Eucgr.D01917.1.p 381 IHFTSNEILLRAFEGKDRVHIIDFDIKQGLQWPSLFQSLASRSNPPSHVRITGIGE----SKQELVETGDRLAVFAGSFNLPFEFHP-VVDRL 468
                       ********************************************************....***************************.7**** PP

              GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres 279
                       ed++l++L+vk+gE++aVn+v qlh++l +    +   +++L+l++s++P v+ ++eqea hn++s+  r++++l+yysalfds++++lp es
  Eucgr.D01917.1.p 469 EDVRLWMLHVKEGESVAVNCVCQLHKTLYDGSGGA--LRDFLRLIRSTNPVVLLMAEQEAHHNTSSLEVRVINSLRYYSALFDSIHSSLPLES 559
                       ***************************95543333..589***************************************************** PP

              GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveee...sgslvlgWkdrpLv 368
                        +r+k+E+  ++rei+n+vaceg++r erh+++ +Wr+ +e+  F+ ++ +e++  q ++ll++++ ++ + v e+   +++l+l W+d+pL+
  Eucgr.D01917.1.p 560 AARVKIEEL-FAREIRNIVACEGSDRLERHQSFDEWRKLMEQGAFRCLETTERERIQSQMLLKMYDvDEDFIVSERgqdQAALTLSWQDQPLY 651
                       *******98.********************************************************888899996555499999********* PP

              GRAS 369 svSaW 373
                       +vSaW
  Eucgr.D01917.1.p 652 TVSAW 656
                       ***** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098555.458263633IPR005202Transcription factor GRAS
PfamPF035141.1E-121289656IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 673 aa     Download sequence    Send to blast
MLAGCSSSTL LSPRHRLRSE PSAVAQFQAC HFQLPSMSTQ RLDLPCSFSR KENSRPQSLR  60
PVSLSVEKTS IEATTTTCSL KQHIRLPPLA TTSQGSIEGR REVKGEFWER GKSLKRFADR  120
SSVDESYVSR AKRKRHGNSN EKPDYVGEGG ENLSLGQLSG GSFWFQPSFS ASPIPFSITC  180
SQDDEERVCF VPSEVVSSPM PLSNNPWVES IVTKITDLGE KDVEISHGPV KEDSGSSASS  240
DSQSLALRLN ENMSEHEAGN GSGNPYPHEG FSLEASEENH HGEHHEFELV SLLTACVEAI  300
GSKNIPVINH FIAKLGDHAS PRGSTISRVI AYYTEALALR VTRLWPHVFH ITTPREVDRV  360
DEDSGMALRL LNQVSPIPKF IHFTSNEILL RAFEGKDRVH IIDFDIKQGL QWPSLFQSLA  420
SRSNPPSHVR ITGIGESKQE LVETGDRLAV FAGSFNLPFE FHPVVDRLED VRLWMLHVKE  480
GESVAVNCVC QLHKTLYDGS GGALRDFLRL IRSTNPVVLL MAEQEAHHNT SSLEVRVINS  540
LRYYSALFDS IHSSLPLESA ARVKIEELFA REIRNIVACE GSDRLERHQS FDEWRKLMEQ  600
GAFRCLETTE RERIQSQMLL KMYDVDEDFI VSERGQDQAA LTLSWQDQPL YTVSAWVPAD  660
VAGSSSSFSQ PN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-6829665826380Protein SCARECROW
5b3h_A4e-6829665825379Protein SCARECROW
5b3h_D4e-6829665825379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.D01917.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010053331.10.0PREDICTED: scarecrow-like protein 28
SwissprotQ9CAN30.0SCL28_ARATH; Scarecrow-like protein 28
TrEMBLA0A059CGM10.0A0A059CGM1_EUCGR; Uncharacterized protein
STRINGXP_010053331.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72962743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.10.0GRAS family protein