PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.D01455.1.p
Common NameEUGRSUZ_D01455
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family FAR1
Protein Properties Length: 540aa    MW: 62647 Da    PI: 6.4118
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.D01455.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR142.52.2e-1322862990
              FAR1 29 tkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90
                       +++fvC+ +g++  +kk + +++r r++ r++C+ak+ ++ke     +kw+v ++++ HnHel 
  Eucgr.D01455.1.p 22 FSHDFVCYWSGFAPVRKKPSGEHHRDRKSVRCSCDAKMYLSKEVvegVSKWCVVQFSNVHNHELL 86
                      6899**************************************9987789**************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.5E-102286IPR004330FAR1 DNA binding domain
PfamPF105513.8E-8219273IPR018289MULE transposase domain
PROSITE profilePS509669.78411446IPR007527Zinc finger, SWIM-type
PfamPF044342.9E-7417446IPR007527Zinc finger, SWIM-type
SMARTSM005751.3E-5421448IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 540 aa     Download sequence    Send to blast
MVFKSDDDAF EYYSNFVRKS GFSHDFVCYW SGFAPVRKKP SGEHHRDRKS VRCSCDAKMY  60
LSKEVVEGVS KWCVVQFSNV HNHELLEDNQ VRLLPAYRKI HAADQERILL LSKAGFPIHR  120
IVKVLELEKG IQGGQLPFLE RDVRNFIQNR KKVVQENDAL LNEKRENDIM ELLEACKASK  180
QADEGFSYVY SVDDNDKLEH ITWSYSNSIN AYATFGDVDE APQSFSWALE MFVWFMRGRS  240
PQTILTDLDP GLRDAVRGKL ANTKHITCTW NISPKLSSWF SVPLGSQYAD FRSEFDAFHY  300
VENTEDFELR WNEMVSRFGL GSDKRIALLY SIRNSWVGIS ATFQNQSHHE MQYMPSKACI  360
PMEEHAQSIL TPFGFKALQN ELVLAMQYAM SELADGSYLL RHYKKMNDDC LVMWIPEEEQ  420
IHCSCKEFES SGILCRHGLS VFIRKNYFQL PSKYFITRWR RESTITCYDE PAPQDSDNEW  480
FREYQSLSAS LFIESSLTRG CTNYVRRELM KEVKRILEEV RNMPKTDGVT VDMTLSPTG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.D01455.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010052962.10.0PREDICTED: putative protein FAR1-RELATED SEQUENCE 10 isoform X1
RefseqXP_010052963.10.0PREDICTED: putative protein FAR1-RELATED SEQUENCE 10 isoform X1
SwissprotQ9LKR40.0FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBLA0A059CFG40.0A0A059CFG4_EUCGR; Uncharacterized protein
STRINGXP_010052961.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17652674
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.10.0FAR1-related sequence 10
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]