PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.D01451.1.p
Common NameEUGRSUZ_D01451, LOC104441501
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family FAR1
Protein Properties Length: 695aa    MW: 79835.9 Da    PI: 6.6291
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.D01451.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1682.4e-2168159190
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 
                       ++Y ++A++ GFs+rk++s+ s + g i+kr+fvC+++g++  +kk + +++r r++ r+gC+ak+ ++ke     ++w+v ++++ HnHel 
  Eucgr.D01451.1.p  68 EYYGNFARKNGFSIRKERSRLSPQLG-IYKRDFVCYRSGFAPVRKKPSGEHHRDRKSVRCGCDAKMYLSKEVvegISQWCVVQFSNVHNHELL 159
                       59********************8888.*******************************************99867789*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031017.2E-1968159IPR004330FAR1 DNA binding domain
PfamPF105511.0E-19291383IPR018289MULE transposase domain
PROSITE profilePS509669.755563598IPR007527Zinc finger, SWIM-type
PfamPF044341.9E-8566598IPR007527Zinc finger, SWIM-type
SMARTSM005751.8E-6573600IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 695 aa     Download sequence    Send to blast
MTSLSSKNIW IQRQQCPCGD WKCFVAYEGN NEETTVASQL AKAKAASAEA MVVPYVGMVF  60
KSDDDAFEYY GNFARKNGFS IRKERSRLSP QLGIYKRDFV CYRSGFAPVR KKPSGEHHRD  120
RKSVRCGCDA KMYLSKEVVE GISQWCVVQF SNVHNHELLE DDQVRLLPAY RKIHEADQER  180
ILLLSKAGFP IHHIVKVLEL EKGIQGGQLP FLERDVRNFI QNRKKVVQEN DALLNEKREN  240
DIMELLEACK ASKEADEGFC FDCSVDDNDK LEHIAWSYGD SVNAYTMFGD VVHFDTSYRS  300
ITYGMLFGAW FGIDSNGRMI IFGCVLLQDE APRSFAWALQ SFVQFMRGRS PQTILTDLDP  360
GLRDAVRGKL PNTKHITCIW NISPKVSSWF TVPLGCQYAE FRSEFDALHC VENTEDFELR  420
WNEMVSRFGL GSDKHIALLY SIRTSWALCY TRGHFLARMT TVAFFRSVES FLKGIFSSNA  480
CLRSFFDQVG ITANFQNQSH LEMQCMPSKA CIPMEEHASS ILTPFAFNAL QNELVLAMQY  540
AMSELADGSY LLHHYKKMDG DCLVMWMPEE EQIHCSCKEF ESSGILCRHA LSVFIRKNYF  600
QLPGKYFITR WRRESSRTCY DEPAPQDSDN EWFREYQSLS ESLFTESSLT RGRTNYVRRE  660
LMKEVKRILE EVRSMPEIDG VAVDLTLSPT GRSF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.D01451.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010052962.10.0PREDICTED: putative protein FAR1-RELATED SEQUENCE 10 isoform X1
RefseqXP_010052963.10.0PREDICTED: putative protein FAR1-RELATED SEQUENCE 10 isoform X1
SwissprotQ9LKR40.0FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBLA0A059CFU30.0A0A059CFU3_EUCGR; Uncharacterized protein
STRINGXP_010052961.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17652674
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.10.0FAR1-related sequence 10
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]