PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.D01364.1.p
Common NameEUGRSUZ_D01364, LOC104441435
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family TALE
Protein Properties Length: 376aa    MW: 42013.1 Da    PI: 6.8466
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.D01364.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.62.5e-093033372155
                       HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
          Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                       k +yps++++  LA+++gL+++q+ +WF N+R ++
  Eucgr.D01364.1.p 303 KWPYPSESQKLALAESTGLDQKQINNWFINQRKRH 337
                       569*****************************885 PP
2ELK40.46e-14257278122
               ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                       ELK qLlrKYsgyLgsLkqEF+
  Eucgr.D01364.1.p 257 ELKTQLLRKYSGYLGSLKQEFM 278
                       9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012556.4E-17117161IPR005540KNOX1
PfamPF037902.5E-21119157IPR005540KNOX1
SMARTSM012567.9E-27170221IPR005541KNOX2
PfamPF037912.3E-21173220IPR005541KNOX2
SMARTSM011883.9E-8257278IPR005539ELK domain
PfamPF037891.2E-10257278IPR005539ELK domain
PROSITE profilePS5121311.348257277IPR005539ELK domain
PROSITE profilePS5007112.989277340IPR001356Homeobox domain
SMARTSM003897.4E-13279344IPR001356Homeobox domain
SuperFamilySSF466892.05E-19279354IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.8E-28282342IPR009057Homeodomain-like
CDDcd000861.82E-12289341No hitNo description
PfamPF059206.8E-17297336IPR008422Homeobox KN domain
PROSITE patternPS000270315338IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009934Biological Processregulation of meristem structural organization
GO:0048440Biological Processcarpel development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MEGGSNSTNS PSCLMAFGEN GHHSGGGDGL CPMMMTMMPI NTITSSSHPH PHHQHHHHHH  60
HHHQNLNTST HQYFLDQTAR NSSSGSSPIL DDRNNNSNNN AGGSGSGSGS GCFFMDNDVK  120
AKIMAHPHYH RLLSAYVNCQ KVGAPPGVVA KLEEACASAA IMAGNSGMSN TGCIGEDPAL  180
DQFMEAYCEM LTKYEQELSK PFKEAMLFLQ RIECQFKALT LGVPSDSVAL SEAFDRNGSS  240
EEDDVNNFID PQAEDRELKT QLLRKYSGYL GSLKQEFMKK RKKGKLPKEA RQQLLDWWSR  300
HYKWPYPSES QKLALAESTG LDQKQINNWF INQRKRHWKP SEDMQFVVMD ATHPHYYMDN  360
MLGNPFPMDI SPTLL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1272281LKQEFMKKRK
2278282KKRKK
Functional Description ? help Back to Top
Source Description
UniProtPossible transcription activator involved in early embryonic development. Probably binds to the DNA sequence 5'-TGAC-3'.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.D01364.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010052890.10.0PREDICTED: homeobox protein SBH1
SwissprotP466081e-155HSBH1_SOYBN; Homeobox protein SBH1
TrEMBLA0A059CEY30.0A0A059CEY3_EUCGR; Uncharacterized protein
STRINGXP_010052890.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM64732644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62360.11e-138KNOX/ELK homeobox transcription factor
Publications ? help Back to Top
  1. Shu Y, et al.
    GmSBH1, a homeobox transcription factor gene, relates to growth and development and involves in response to high temperature and humidity stress in soybean.
    Plant Cell Rep., 2015. 34(11): p. 1927-37
    [PMID:26205508]