PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.D00972.2.p
Common NameEUGRSUZ_D00972
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family G2-like
Protein Properties Length: 309aa    MW: 33078.8 Da    PI: 7.0064
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.D00972.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like107.11e-3349103155
           G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                       k+rlrWt++LH+rFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl
  Eucgr.D00972.2.p  49 KQRLRWTHDLHDRFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 103
                       79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.42346106IPR017930Myb domain
SuperFamilySSF466893.05E-1748103IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.3E-3248104IPR009057Homeodomain-like
TIGRFAMsTIGR015577.0E-2649104IPR006447Myb domain, plants
PfamPF002497.7E-951102IPR001005SANT/Myb domain
PfamPF143791.6E-23135181IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MYQHKGGASS SLVPGNTMVH GQHLDSGANT MDSIGGGNNH SNNANLASKQ RLRWTHDLHD  60
RFVDAVAQLG GPDRATPKGV LRVMGVQGLT IYHVKSHLQK YRLAKYLPDS SDGKKAEKKE  120
SADVLSDMDG SSGGMQITEA LKLQMEVQKR LHEQLEVQRQ LQLRIEAQGK YLKKIIEEQQ  180
RLSGALADGS ADESGDKGQE DSKTDPPTPA PISESPIQDK SKDCAVAKSL SLDGSLSSHN  240
HEPLTPDSGC NVSSPAESPD GERSAKKPRV TAGASHAKPE IVLHPIFESS LGCSYTNSSF  300
KLPDQGSV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A5e-2349106158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B5e-2349106158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C5e-2349106158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D5e-2349106158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00252DAPTransfer from AT2G01060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.D00972.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018727520.10.0PREDICTED: LOW QUALITY PROTEIN: myb family transcription factor PHL7-like
SwissprotQ9SJW01e-125PHL7_ARATH; Myb family transcription factor PHL7
TrEMBLA0A059CF790.0A0A059CF79_EUCGR; Uncharacterized protein
STRINGXP_006467243.11e-149(Citrus sinensis)
STRINGXP_006449962.11e-149(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.11e-112G2-like family protein