PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Eucgr.D00726.1.p | ||||||||
Common Name | EUGRSUZ_D00726, LOC104441087 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 297aa MW: 32398.8 Da PI: 10.9842 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 42 | 2.1e-13 | 131 | 176 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++WT+eE+ ++ + + lG+g+W+ I++++ +Rt+ q+ s+ qky Eucgr.D00726.1.p 131 LPWTEEEHRTFLVGLETLGKGDWRGISKKFVGTRTPTQVASHAQKY 176 69****************************99*************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.497 | 125 | 181 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.81E-18 | 126 | 182 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 5.2E-17 | 128 | 180 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 5.8E-10 | 129 | 179 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.4E-10 | 131 | 175 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.26E-10 | 132 | 177 | No hit | No description |
Pfam | PF00249 | 2.1E-11 | 132 | 176 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 297 aa Download sequence Send to blast |
MGRKCSHCGF MGHNSRTCAS IRRRDASFGG GGRVKLFGVQ LEAAYPCGVA SRLPLKKSLS 60 MDCLMPSVRV LTSSSPLSSA TNSSLSLRAA CDVGDRLLRD ESPNKAANSP SNDGYASDGF 120 LGRAQERKKG LPWTEEEHRT FLVGLETLGK GDWRGISKKF VGTRTPTQVA SHAQKYFLRQ 180 KSLLPRRNKR RPSLFDVGME RCRAHHHGQI PKPSESFTPI CLFSPQFGST GRDSRARMVL 240 LASPRTCSFR DREIPSSNLA NHASSVSGRQ ASNPNLELTL ASPNHQLDQA SSIRVT* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Eucgr.D00726.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010052392.1 | 0.0 | PREDICTED: protein REVEILLE 5 | ||||
TrEMBL | A0A059CD27 | 0.0 | A0A059CD27_EUCGR; Uncharacterized protein | ||||
STRING | XP_010052392.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5496 | 27 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G56840.1 | 4e-46 | MYB_related family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Eucgr.D00726.1.p |
Entrez Gene | 104441087 |