PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.D00596.2.p
Common NameEUGRSUZ_D00596, LOC104440989
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family HB-other
Protein Properties Length: 1689aa    MW: 189616 Da    PI: 5.0561
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.D00596.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.26e-182883257
                      T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
          Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                       kR+  t+ qle+Le+++  ++yps++ r+eL+ klgLt+rq ++WF+ rR k+k+
  Eucgr.D00596.2.p 28 PKRQMKTPFQLETLEKAYSIEMYPSEAIRAELSVKLGLTDRQLQMWFCHRRLKDKN 83
                      69***************************************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.0E-18983IPR009057Homeodomain-like
SuperFamilySSF466895.56E-161883IPR009057Homeodomain-like
PROSITE profilePS5007115.5162484IPR001356Homeobox domain
SMARTSM003896.2E-182688IPR001356Homeobox domain
PfamPF000461.8E-152882IPR001356Homeobox domain
CDDcd000863.84E-142985No hitNo description
PROSITE profilePS5082715.749546605IPR018501DDT domain
SMARTSM005711.1E-19546605IPR018501DDT domain
PfamPF027913.1E-16547602IPR018501DDT domain
PfamPF050661.5E-15676744IPR007759HB1/Asxl, restriction endonuclease HTH domain
PfamPF156128.7E-8889933IPR028942WHIM1 domain
PfamPF156136.3E-1410731143IPR028941WHIM2 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1689 aa     Download sequence    Send to blast
MEEGGSEGEK QGRSPGKAGN SGEGPSKPKR QMKTPFQLET LEKAYSIEMY PSEAIRAELS  60
VKLGLTDRQL QMWFCHRRLK DKNNSSEKKL QKSAAAVGMK EGIKDGLMAV ADPGSDYGSG  120
SGSGSSPYAS RELQGMVPRR DGDDSAIGRR CYESPRTIME LRAIACVEAQ LGEPLREDGP  180
ILGMEFDPLP PDAFGAPIVA DEEQKGPVNP YDGKVYVRRD AVSNKAASRL LHHEYQLLHD  240
QPVRYHTPGR IAQTHYLDDP LDGPTTRVSS IHGSEKLPSV DGVRGHRLRV CRVSQEDREG  300
NRVLSPLRDD HSLQPRESFV NIQMDAHQGS HPFIGQEDSS TLPDRTILHD TSDLHVKRKR  360
KIEEAQITRE VEANEHRNRK ALEKENIMRR KAEERMRKEM ERFDRERRKE EERLMREQQR  420
EEERLLREQR RELERREKYL QKESIKAEKK RQKEELRREK EAERRKAAVE KATARRIAKE  480
SMELMEDEQL ELMELAAASK GLPSIVNLDH ATMQNLELFR DSLSAFPPQS VRLKRPFAVQ  540
PWTNSEENIG KLLMAWRFFL TFADVLGLWP FTLDEFVQAF HDYDSRLLGE LHVALLKSII  600
RDIEDVARTP ATGLGINQNN AANPEGGHPQ IVEGVKGCEE VISTLRSGSA AEKALTIMRD  660
KGLLLPRRSR HRLTPGTVKF AAFHVLSLEG SKGLTVLELA DKIQKSGLRD LTTSKTPEAS  720
ISVALTRDTK LFERIAPSTY RVRSAYRKDP ADAESILAEA RKKIRIFENG ILSGEDADEV  780
EREDEGERDE EFEGDVDEDL EVDDLATTLS ANNDVDQCGQ VNACPEIGKE NVSDDTNLQN  840
EIEGDVESCT VASSVDVCHP STATEHHKDA EDFCGGKDDQ ESVEIDESKS GESWVRGLTE  900
GEYSHLSVEE RLNALVALIG IANEGNSIRA VLEDRLEAAS ALKKQMWVEA QLDKSRLKDE  960
FTAKVDFLSL LGSKTEFQLP NSVVDGSHSS WLLADNKNND VSAENQNSLH GPQGLQNDLS  1020
SVPTERFSAV QDSAGGPGGP DNFSMQYGHG SKRSRTQLKS YIAHRAEEIY VYRSLPLGQD  1080
RRRNRYWWFV ASASKNDPGS GRIFVELHDN SWRLIDTEEA FDALLMSLDT RGIRESHLRL  1140
MLLEVDPLFK ENVRRNLQSA KVFSRGGLPV KNEPAEMDSS PDCPNDFDSP NSTVCASNSD  1200
SFETSSSIKI ELGRNEFEKK AALKRYQDLQ KWMWKECCIS SSLSSIKVRK KRCDQLLGIC  1260
DSCLSTYFFE AIHCQSCHKT FGSEFDFSLN HVGCEDKRKL EHGYFHILDY SLPLGIRLIK  1320
ALLAYLEVHI PSEAIHSFWL EDMDCRKTWG MKLNASSSTE ELLQMVTLLE GAIKREYLSA  1380
DFELSKELLG LVRNTGDESK SSEAVSVLPW IPQTTAAVAL RLFELDSSIT YVKQEKSEPG  1440
VDMALEDYMK LPVNTPSIKL NETEPSEGDQ ELQMKDLSAD VIKGRNCKKR GLGSRDRSNA  1500
RMHQRRPGAK PFAGKQTSLN VESLNRGFTQ QGQGYGRGRR TLRRRRTEGK AVQGRLLGNM  1560
VETARPNIIK DSTAVEEWAA EQKSPVRLVT ADNSNSMEEA ESDENEVVAY EFDRGNWEVG  1620
LDGTSNGWGK MDLSDEDVDF YDNNKGIEDV VDEDSEGDAD LGDADNMALD TIPNGESLDS  1680
AVSEDYSE*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC. {ECO:0000269|PubMed:22694359}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.D00596.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1584972e-32AC158497.2 Medicago truncatula chromosome 2 clone mth2-48e18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010052272.10.0PREDICTED: homeobox-DDT domain protein RLT1 isoform X5
SwissprotF4HY560.0RLT1_ARATH; Homeobox-DDT domain protein RLT1
TrEMBLA0A059CE390.0A0A059CE39_EUCGR; Uncharacterized protein
STRINGXP_010052269.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28420.10.0homeobox-1