 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Eucgr.C04180.1.p |
| Common Name | EUGRSUZ_C04180, LOC104438509 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
|
| Family |
C3H |
| Protein Properties |
Length: 343aa MW: 38038.8 Da PI: 7.4055 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Eucgr.C04180.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 27 | 7.7e-09 | 87 | 111 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26
+kt+ C f G C+ G++C+FaHg
Eucgr.C04180.1.p 87 WKTRMCAKFKI-GMCRNGENCNFAHG 111
8**********.*************9 PP
|
| 2 | zf-CCCH | 28.4 | 2.8e-09 | 149 | 171 | 3 | 25 |
S---SGGGGTS--TTTTT-SS-S CS
zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25
++lC+ f+ + +C+yGdrC+F H
Eucgr.C04180.1.p 149 MKLCKKFYNGEECPYGDRCNFLH 171
689******66************ PP
|
| 3 | zf-CCCH | 41.4 | 2.3e-13 | 228 | 253 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26
+kt+lC + tG+C++G++C+FaHg
Eucgr.C04180.1.p 228 WKTKLCTKWEITGQCPFGEKCHFAHG 253
8************************9 PP
|
| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| Gene3D | G3DSA:4.10.1000.10 | 5.7E-14 | 82 | 119 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 2.75E-8 | 84 | 117 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 5.6E-4 | 86 | 112 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 14.023 | 86 | 113 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 6.8E-5 | 87 | 111 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 14.117 | 146 | 174 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 3.4E-7 | 146 | 173 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 9.8E-4 | 146 | 173 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 4.7E-9 | 149 | 172 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 8.2E-7 | 149 | 171 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 1.2E-15 | 224 | 260 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 3.92E-10 | 226 | 258 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 2.7E-7 | 227 | 254 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 15.544 | 227 | 255 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 9.9E-11 | 228 | 253 | IPR000571 | Zinc finger, CCCH-type |
| Sequence ? help Back to Top |
| Protein Sequence Length: 343 aa
Download sequence Send
to blast |
MNFSEPGLPL MPAMLHYVGG GVGGDAGGYW SQFELKSEEF DVNSEFDQPL APPSKRPRNF 60
EDNRSGSVAS NPRPNPPVNK GTTNIFWKTR MCAKFKIGMC RNGENCNFAH GVEDMRQPPP 120
NWQELVGVRD EDNKSSGNWE DDQKIIHRMK LCKKFYNGEE CPYGDRCNFL HEDPAKFRDD 180
SGRFRETSAI CIGTTGMPTG QGTGSSQSDV SRPNTGADSR VTSKPVYWKT KLCTKWEITG 240
QCPFGEKCHF AHGLADLQSP SGRFEGDAVQ TALVVATKPQ PQLLHINDGP PLMAAKGPTS 300
TEEAQSKKCL LRWKGHKKIN QIYGDWLDDL PLVQNLPNKV ES*
|
