PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.C03701.1.p
Common NameEUGRSUZ_C03701, LOC104438197
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C3H
Protein Properties Length: 385aa    MW: 42471.5 Da    PI: 6.6368
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.C03701.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.59.9e-08146166526
                       --SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                        C+ f++ G C+ Gd C FaHg
  Eucgr.C03701.1.p 146 ACPEFRK-GSCRKGDACEFAHG 166
                       7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003563.4E-5141167IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.981142168IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.9E-5145168IPR000571Zinc finger, CCCH-type
PfamPF006427.6E-6146166IPR000571Zinc finger, CCCH-type
PROSITE profilePS501038.005176200IPR000571Zinc finger, CCCH-type
SMARTSM0035623176199IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006979Biological Processresponse to oxidative stress
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0010150Biological Processleaf senescence
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MMLGEPHRPP NPTIDVPPWP ILDDPTDDAV PHSPYSPYTL NAGYGGGCDS SPSAAGPGHF  60
QDVMAALRRF LPSNRPDTDP DPDMTSSREA DFPMDVYSCD NFRMYEFKVR RCARGRSHDW  120
TECPYAHPGE KARRRDPRKY HYSGTACPEF RKGSCRKGDA CEFAHGVFEC WLHPARYRTQ  180
PCKDGAGCRR RVCFFAHTPE QLRVVTPQQS PRGAATQLPF MASPSTVSPE DSPPMSPMSA  240
AVTHQSLSRS LGSSSVNEMV MASLRNLQLG KVKSLPSSWN ANAHVTTAAA TTASYGSPLR  300
PGFCSVPTTP TRVPARPGIG YRDFWDQVEE EEEPLMERVE SGRDLRAKMF EKLREESSLD  360
RADPEHPSLG GGGPDVEWVS DLVN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.C03701.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018727072.10.0PREDICTED: zinc finger CCCH domain-containing protein 20
SwissprotO821991e-122C3H20_ARATH; Zinc finger CCCH domain-containing protein 20
TrEMBLA0A059CUX60.0A0A059CUX6_EUCGR; Uncharacterized protein
STRINGXP_010049593.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12492788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.11e-102C3H family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Swain S,Singh N,Nandi AK
    Identification of plant defence regulators through transcriptional profiling of Arabidopsis thaliana cdd1 mutant.
    J. Biosci., 2015. 40(1): p. 137-46
    [PMID:25740148]
  3. Singh N,Swain S,Singh A,Nandi AK
    AtOZF1 Positively Regulates Defense Against Bacterial Pathogens and NPR1-Independent Salicylic Acid Signaling.
    Mol. Plant Microbe Interact., 2018. 31(3): p. 323-333
    [PMID:29327969]