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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.C03658.1.p | ||||||||
Common Name | EUGRSUZ_C03658 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | MYB_related | ||||||||
Protein Properties | Length: 364aa MW: 38986.6 Da PI: 9.9798 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 42.2 | 1.9e-13 | 173 | 217 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ ++ + ++lG+g+W+ I+r ++Rt+ q+ s+ qky Eucgr.C03658.1.p 173 PWTEEEHRTFLVGLEKLGKGDWRGISRSYVTTRTPAQVASHAQKY 217 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.60.10 | 9.7E-4 | 65 | 83 | IPR001878 | Zinc finger, CCHC-type |
PROSITE profile | PS50158 | 8.532 | 67 | 82 | IPR001878 | Zinc finger, CCHC-type |
PROSITE profile | PS51294 | 17.925 | 166 | 222 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.22E-17 | 167 | 221 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.4E-17 | 169 | 221 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 7.9E-10 | 170 | 220 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.8E-10 | 170 | 217 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 4.3E-11 | 173 | 217 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.19E-9 | 173 | 218 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 364 aa Download sequence Send to blast |
MSIQSSSFLV HPVSIIYTSQ THIHCTLSLS LSLSLSLSLS EFSLCLSEFG VCGTSLVCES 60 VWAKMGRKCS HCGNIGHNSR TCTVTYSSSA TVGFDSGGLR LFGVQLDISP CSSSLAIKKS 120 FSMDCLPFTS SPASSSSLSS SRISIGENSD KASLGYLSDG LLGRSQEKKK GVPWTEEEHR 180 TFLVGLEKLG KGDWRGISRS YVTTRTPAQV ASHAQKYFLR QVSFNKKKRR SSLFDMVDVK 240 TAAGDRLGSL TAKPSESVPN CKMGTLMSHL QVHDARTTQL FTALGSSKED GKLNVRESVR 300 MMTGSSSHGL ISSSQKPSNA PKSIGVLPNS GLDLELKLAV SRPLERKKPS IVAPFFVGPL 360 AVT* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 225 | 229 | KKKRR |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00565 | DAP | Transfer from AT5G56840 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.C03658.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010049555.2 | 0.0 | PREDICTED: uncharacterized protein LOC104438169 | ||||
TrEMBL | A0A059CUS8 | 0.0 | A0A059CUS8_EUCGR; Uncharacterized protein | ||||
STRING | XP_010049555.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5496 | 27 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56840.1 | 7e-58 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.C03658.1.p |