PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.C03151.1.p
Common NameEUGRSUZ_C03151, LOC104437927
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB
Protein Properties Length: 284aa    MW: 32204.5 Da    PI: 8.1179
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.C03151.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.97.6e-161461148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      rg+WT+ Ed +l  +vk +G g+W+  +++ g++R++k+c++rw++yl
  Eucgr.C03151.1.p 14 RGAWTPLEDRILTAYVKAHGEGQWRNLPKRAGLKRCGKSCRLRWLNYL 61
                      89********************************************97 PP
2Myb_DNA-binding51.52.3e-1667111147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       rg+ + +E+el+++++k+lG++ W++Ia +++ gRt++++k++w++ 
  Eucgr.C03151.1.p  67 RGNISHDEEELIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNTT 111
                       78999*****************.*********.************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-22564IPR009057Homeodomain-like
PROSITE profilePS5129415.919961IPR017930Myb domain
SuperFamilySSF466895.08E-2811108IPR009057Homeodomain-like
SMARTSM007173.3E-131363IPR001005SANT/Myb domain
PfamPF002494.6E-141461IPR001005SANT/Myb domain
CDDcd001672.47E-91661No hitNo description
PROSITE profilePS5129425.25962116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-2365115IPR009057Homeodomain-like
SMARTSM007176.8E-1566114IPR001005SANT/Myb domain
PfamPF002492.3E-1467111IPR001005SANT/Myb domain
CDDcd001674.18E-1171112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MGRSPCCSKV GLNRGAWTPL EDRILTAYVK AHGEGQWRNL PKRAGLKRCG KSCRLRWLNY  60
LRPDIKRGNI SHDEEELIIR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNT TLVKKAKDQP  120
SSFPSRESPS TESKAKRISA NNGYSNIVKP SSSQSPPATV TRPQPVRAKP TQCTPVLAWE  180
KLYELGPLLK PTSDIQDPQI GEARREDFPR QGVSEIRLFD FELDDHFQAE QDRFMGNMLE  240
TIDNIAPNVE EILLESWTGS VCTKEDTLDL ESIPFVLDPE EWP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C8e-251211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.C03151.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010049276.10.0PREDICTED: myb-related protein 308
TrEMBLA0A059CV210.0A0A059CV21_EUCGR; Uncharacterized protein
STRINGXP_010049276.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.13e-62myb domain protein 4