PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.C02990.1.p
Common NameEUGRSUZ_C02990
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C3H
Protein Properties Length: 356aa    MW: 38841.6 Da    PI: 7.9752
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.C02990.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.11.5e-08149169526
                       --SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                        C++f++ G Ck Gd+C FaHg
  Eucgr.C02990.1.p 149 ACPDFRK-GACKKGDSCEFAHG 169
                       7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902293.61E-5143173IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-5144170IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.929144171IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.3E-6148171IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-6149169IPR000571Zinc finger, CCCH-type
SMARTSM003562.6179202IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.39179203IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MMMMTMAAGG GDHHARSTPT VQIPPAWDPL DDPATGGGGG PYSPYSPYSP YSGGGNAGGA  60
AGGGECCNDL TALRRFLPSN HHQDEEDEED GRAPGEDGVL GCDEFRMYEF KVRKCARGRS  120
HDWTECPYAH PGEKARRRDP RRFFYSGTAC PDFRKGACKK GDSCEFAHGV FECWLHPERY  180
RTQACKDGQS CRRRVCFFAH SPDQLPGPPR PPAAAAAAQS QERHRLRVRV PGPPLRCRGG  240
GLRLLLHQAV VGLLHILAHL DPDHLVAPDL APDQLAPDVP EPTRRLLRVA RIGERAGGLH  300
EEYADRQDED EPPRADGGVS LRVPAPTRVP PCGAGDSQGR VFTAVRATRR WRRAL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.C02990.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010049147.11e-114PREDICTED: LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 2
SwissprotO821993e-67C3H20_ARATH; Zinc finger CCCH domain-containing protein 20
SwissprotO823072e-67C3H23_ARATH; Zinc finger CCCH domain-containing protein 23
TrEMBLA0A059CUK70.0A0A059CUK7_EUCGR; Uncharacterized protein
STRINGXP_010049147.11e-113(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12492788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29190.12e-67C3H family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Swain S,Singh N,Nandi AK
    Identification of plant defence regulators through transcriptional profiling of Arabidopsis thaliana cdd1 mutant.
    J. Biosci., 2015. 40(1): p. 137-46
    [PMID:25740148]
  3. Singh N,Swain S,Singh A,Nandi AK
    AtOZF1 Positively Regulates Defense Against Bacterial Pathogens and NPR1-Independent Salicylic Acid Signaling.
    Mol. Plant Microbe Interact., 2018. 31(3): p. 323-333
    [PMID:29327969]