PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

C3H

Protein Properties

Length: 356aa MW: 38841.6 Da PI: 7.9752

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.C02990.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	26.1	1.5e-08	149	169	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C++f++ G Ck Gd+C FaHg Eucgr.C02990.1.p 149 ACPDFRK-GACKKGDSCEFAHG 169 7****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF90229	3.61E-5	143	173	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.3E-5	144	170	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.929	144	171	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	7.3E-6	148	171	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.3E-6	149	169	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.6	179	202	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	6.39	179	203	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence Send to blast
MMMMTMAAGG GDHHARSTPT VQIPPAWDPL DDPATGGGGG PYSPYSPYSP YSGGGNAGGA 60 AGGGECCNDL TALRRFLPSN HHQDEEDEED GRAPGEDGVL GCDEFRMYEF KVRKCARGRS 120 HDWTECPYAH PGEKARRRDP RRFFYSGTAC PDFRKGACKK GDSCEFAHGV FECWLHPERY 180 RTQACKDGQS CRRRVCFFAH SPDQLPGPPR PPAAAAAAQS QERHRLRVRV PGPPLRCRGG 240 GLRLLLHQAV VGLLHILAHL DPDHLVAPDL APDQLAPDVP EPTRRLLRVA RIGERAGGLH 300 EEYADRQDED EPPRADGGVS LRVPAPTRVP PCGAGDSQGR VFTAVRATRR WRRAL*

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence Send to blast

MMMMTMAAGG GDHHARSTPT VQIPPAWDPL DDPATGGGGG PYSPYSPYSP YSGGGNAGGA  60
AGGGECCNDL TALRRFLPSN HHQDEEDEED GRAPGEDGVL GCDEFRMYEF KVRKCARGRS  120
HDWTECPYAH PGEKARRRDP RRFFYSGTAC PDFRKGACKK GDSCEFAHGV FECWLHPERY  180
RTQACKDGQS CRRRVCFFAH SPDQLPGPPR PPAAAAAAQS QERHRLRVRV PGPPLRCRGG  240
GLRLLLHQAV VGLLHILAHL DPDHLVAPDL APDQLAPDVP EPTRRLLRVA RIGERAGGLH  300
EEYADRQDED EPPRADGGVS LRVPAPTRVP PCGAGDSQGR VFTAVRATRR WRRAL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.C02990.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010049147.1	1e-114	PREDICTED: LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 2
Swissprot	O82199	3e-67	C3H20_ARATH; Zinc finger CCCH domain-containing protein 20
Swissprot	O82307	2e-67	C3H23_ARATH; Zinc finger CCCH domain-containing protein 23
TrEMBL	A0A059CUK7	0.0	A0A059CUK7_EUCGR; Uncharacterized protein
STRING	XP_010049147.1	1e-113	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1249	27	88

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29190.1	2e-67	C3H family protein

Link Out ? help Back to Top
Phytozome	Eucgr.C02990.1.p

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Swain S,Singh N,Nandi AK Identification of plant defence regulators through transcriptional profiling of Arabidopsis thaliana cdd1 mutant. J. Biosci., 2015. 40(1): p. 137-46 [PMID:25740148] Singh N,Swain S,Singh A,Nandi AK AtOZF1 Positively Regulates Defense Against Bacterial Pathogens and NPR1-Independent Salicylic Acid Signaling. Mol. Plant Microbe Interact., 2018. 31(3): p. 323-333 [PMID:29327969]