PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.C02727.2.p
Common NameEUGRSUZ_C02727
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family TALE
Protein Properties Length: 427aa    MW: 47121.3 Da    PI: 6.61
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.C02727.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox22.91.5e-073724052154
                       HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
          Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                       k +yp++e++++L +++gL+ +q+ +WF N+R +
  Eucgr.C02727.2.p 372 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 405
                       469*****************************87 PP
2ELK27.76.3e-10326347122
               ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                       ELKh+L+++Y+++++++++E++
  Eucgr.C02727.2.p 326 ELKHELKQGYKEKIIDIREEIL 347
                       9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.4E-19161205IPR005540KNOX1
PfamPF037908.6E-18163204IPR005540KNOX1
SMARTSM012561.1E-28214269IPR005541KNOX2
PfamPF037911.0E-20219268IPR005541KNOX2
PfamPF037891.0E-4326347IPR005539ELK domain
SMARTSM011880.0024326347IPR005539ELK domain
PROSITE profilePS512139.865326346IPR005539ELK domain
PROSITE profilePS5007111.855346409IPR001356Homeobox domain
SMARTSM003897.2E-11348413IPR001356Homeobox domain
SuperFamilySSF466896.84E-16348411IPR009057Homeodomain-like
CDDcd000861.24E-11349410No hitNo description
Gene3DG3DSA:1.10.10.601.3E-24353410IPR009057Homeodomain-like
PfamPF059202.0E-17366405IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0009722Biological Processdetection of cytokinin stimulus
GO:0071345Biological Processcellular response to cytokine stimulus
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MAFHNHLSHQ DLSSLHHFAA DQQPPPPQHQ QQQQHLPDSS SSVHHQLHHA AGPNWLNTAL  60
LRSDAAAAAA AAAGGNSFLN LHTSSDSAAS PQAQQQPPAT SASAAAGHHQ WLSRQHSSLL  120
QRNHSEVIDA DSIIDSADLK ESVSKGDGGG GGAAESNWEN AKYKAEILAH PLYEQLLSAH  180
VACLRIATPV DQLPRIDAQL AQSQHVVAKY SAMSQGLVAD DKELDQFMTH YVLLLCSFKE  240
QLQQHVRVHA MEAVMACWEI EQSLQSLTGV SPGEGTGATM SDDEDDQVDS DANLFDGSLD  300
GTDSLGFGPL IPTETERSLM ERVRQELKHE LKQGYKEKII DIREEILRKR RAGKLPGDTT  360
SVLKQWWQTH SKWPYPTEED KARLVQETGL QLKQINNWFI NQRKRNWHSN PSTSTVLKSK  420
RKRGRA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1402422RKRNWHSNPSTSTVLKSKRKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.C02727.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010048923.10.0PREDICTED: homeobox protein knotted-1-like 3 isoform X2
RefseqXP_018726678.10.0PREDICTED: homeobox protein knotted-1-like 3 isoform X3
SwissprotP480000.0KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLA0A059CT330.0A0A059CT33_EUCGR; Uncharacterized protein
STRINGXP_010048922.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.20.0KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]