PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.C02283.1.p
Common NameEUGRSUZ_C02283
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 120aa    MW: 13206.8 Da    PI: 9.9787
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.C02283.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.80.000374668123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      ++C+ C + F ++  L  H++ H
  Eucgr.C02283.1.p 46 FSCNFCQRKFYSSQALGGHQNAH 68
                      89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.96E-64473No hitNo description
Gene3DG3DSA:3.30.160.606.5E-44681IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.9074673IPR007087Zinc finger, C2H2
PROSITE patternPS0002804868IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 120 aa     Download sequence    Send to blast
MDYNYQPNTS LHLSLPKNQP NLELFLDRSS SSSSSPRSPS EVARMFSCNF CQRKFYSSQA  60
LGGHQNAHKL ERTLAKKSRS ELSSAIRAPA ARSPSGSSHA VQVADNLSLL RIEEQVELK*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of floral organ abscission. Participates in processes that directly or indirectly influence shedding of floral organs. {ECO:0000269|PubMed:18192438}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.C02283.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018726188.11e-67PREDICTED: zinc finger protein 2-like
SwissprotQ392612e-24ZFP2_ARATH; Zinc finger protein 2
TrEMBLA0A059CR603e-80A0A059CR60_EUCGR; Uncharacterized protein
STRINGEMJ248523e-32(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66212844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57520.14e-26zinc finger protein 2