PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.C02208.2.p
Common NameEUGRSUZ_C02208, LOC104437326
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 243aa    MW: 27494.1 Da    PI: 4.8711
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.C02208.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.52.5e-135395754
                      HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
               HLH  7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                        Er+RR+++N++++ Lr ++P+ +      K++Ka+i + A++YI++L
  Eucgr.C02208.2.p 53 VSERNRRKKLNERLFALRAVVPNiS------KMDKASIIKDAIDYIQEL 95
                      57*********************66......****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.5264695IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-1749110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.91E-1349100No hitNo description
SMARTSM003534.7E-1552101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-1652110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.8E-115395IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MDNNVEEYQN YWETTMFYQN EELDSWVDEA ISGYYDSSSP DGAASTAASK NIVSERNRRK  60
KLNERLFALR AVVPNISKMD KASIIKDAID YIQELHDQER RIQAEILELE SGKLKKGSGG  120
YDFDQDLPAY LRSKKKRTDA FYDSGGSRIS PIEVLELRIT YMGEKTLVVS LTCSKRTDTM  180
VKLCEVFESL KLKIITANIT SFSGRLLKTV FIEADENEKE NLKTKIETAI AALNDPQSPM  240
SI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-1451111969Transcription factor MYC2
5gnj_B3e-1451111969Transcription factor MYC2
5gnj_E3e-1451111969Transcription factor MYC2
5gnj_F3e-1451111969Transcription factor MYC2
5gnj_G3e-1451111969Transcription factor MYC2
5gnj_I3e-1451111969Transcription factor MYC2
5gnj_M3e-1451111969Transcription factor MYC2
5gnj_N3e-1451111969Transcription factor MYC2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.C02208.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010048565.11e-179PREDICTED: transcription factor bHLH35 isoform X1
SwissprotQ2HIV94e-99BH035_ARATH; Transcription factor bHLH35
TrEMBLA0A059CQV21e-178A0A059CQV2_EUCGR; Uncharacterized protein
STRINGXP_010048564.11e-157(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.11e-100bHLH family protein