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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.C01942.1.p | ||||||||
Common Name | EUGRSUZ_C01942 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 138aa MW: 15496.8 Da PI: 11.9046 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 97.1 | 7.2e-31 | 83 | 132 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++ rqvtfskRrng+lKKA+ELSvLCdaeva+iifs++gklye+ Eucgr.C01942.1.p 83 KRIENDTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFL 132 79**********************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 3.53E-29 | 75 | 135 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 4.6E-41 | 75 | 134 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 31.427 | 75 | 135 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.0E-31 | 77 | 97 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 4.14E-38 | 77 | 134 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 77 | 131 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 6.9E-28 | 84 | 131 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.0E-31 | 97 | 112 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.0E-31 | 112 | 133 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 138 aa Download sequence Send to blast |
SSVSFSTSAS SRRRLRSPAF RDLIRATPSV PRPLRFGASI ECSSPSISSR SSSSDLFLVF 60 CGLRERERER GRGEMVRGKT QMKRIENDTS RQVTFSKRRN GLLKKAFELS VLCDAEVALI 120 IFSPRGKLYE FLSSTRR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 1e-17 | 75 | 134 | 1 | 60 | MEF2 CHIMERA |
6byy_B | 1e-17 | 75 | 134 | 1 | 60 | MEF2 CHIMERA |
6byy_C | 1e-17 | 75 | 134 | 1 | 60 | MEF2 CHIMERA |
6byy_D | 1e-17 | 75 | 134 | 1 | 60 | MEF2 CHIMERA |
6bz1_A | 1e-17 | 75 | 134 | 1 | 60 | MEF2 CHIMERA |
6bz1_B | 1e-17 | 75 | 134 | 1 | 60 | MEF2 CHIMERA |
6bz1_C | 1e-17 | 75 | 134 | 1 | 60 | MEF2 CHIMERA |
6bz1_D | 1e-17 | 75 | 134 | 1 | 60 | MEF2 CHIMERA |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.C01942.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF086642 | 1e-136 | AF086642.1 Eucalyptus globulus subsp. globulus putative MADS box transcription factor ETL mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016451918.1 | 7e-34 | PREDICTED: MADS-box protein SOC1-like isoform X3 | ||||
TrEMBL | A0A059CQU4 | 2e-89 | A0A059CQU4_EUCGR; Uncharacterized protein (Fragment) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM78 | 28 | 413 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45660.1 | 1e-31 | AGAMOUS-like 20 |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.C01942.1.p |