PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.C01043.1.p
Common NameEUGRSUZ_C01043, LOC104436602
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family HSF
Protein Properties Length: 326aa    MW: 35714 Da    PI: 5.105
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.C01043.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind97.91e-30231112103
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                       F++k+y++++d+++++li     +nsf+v+++ +f++++Lp yFkh+nf+SFvRQLn+YgF+kv+ ++         weF++++F +g+k+ll
  Eucgr.C01043.1.p  23 FVMKTYQMVSDPATDNLIA----NNSFIVVQPLDFSQRLLPAYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANQWFLRGQKHLL 102
                       9****************96....589***************************************999.........**************** PP

                       XXXXXXXXX CS
      HSF_DNA-bind  95 ekikrkkse 103
                       ++i r+k++
  Eucgr.C01043.1.p 103 RNIVRRKHS 111
                       *****9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004152.9E-4519108IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.81E-2820108IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.6E-3120108IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.7E-2423108IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405882IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MYTSVHGMEA AAAAANGDAI APFVMKTYQM VSDPATDNLI ANNSFIVVQP LDFSQRLLPA  60
YFKHNNFSSF VRQLNTYGFR KVDPDRWEFA NQWFLRGQKH LLRNIVRRKH SKGAYSQSKG  120
GGDADMDEEE LASEIARLRQ EQRALEEEIR GMSKRLEATE RRPQQMMAFL YKVIEDPELL  180
PRMMGERDMN KRLAVASGDK RQRLMISSAA VSSSSSSGMG VSSSIKSEDD EEGTNFGVMS  240
SPEVEGNLDI SRFCDFTAVP ASSSSASIDG GIGRNMAFSP PYNDVGGYGG VANNQFGYFT  300
EMAVAGGEAG PPTPPYPFSL LEGGF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B4e-21810814129Heat shock factor protein 1
5d5v_B4e-21810814129Heat shock factor protein 1
5d5v_D4e-21810814129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00379DAPTransfer from AT3G24520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.C01043.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2485381e-36AK248538.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf61l22, mRNA sequence.
GenBankAK3544351e-36AK354435.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1007F06.
GenBankAK3581361e-36AK358136.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1069K14.
GenBankAK3703991e-36AK370399.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2110B13.
GenBankHM4460411e-36HM446041.1 Hordeum vulgare subsp. vulgare heat shock factor C2b (HsfC2b) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010047735.10.0PREDICTED: heat stress transcription factor C-1
SwissprotQ9LV529e-87HSFC1_ARATH; Heat stress transcription factor C-1
TrEMBLA0A059CNA90.0A0A059CNA9_EUCGR; Uncharacterized protein
STRINGXP_010047735.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67752743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.12e-76heat shock transcription factor C1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guan Q,Yue X,Zeng H,Zhu J
    The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis.
    Plant Cell, 2014. 26(1): p. 438-53
    [PMID:24415771]