PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

NAC

Protein Properties

Length: 484aa MW: 53625.5 Da PI: 6.8882

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.C00958.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	115.5	5.6e-36	49	191	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkklelee.......vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk...... 79 lp+G++F+Ptd+el+ e+L++kve+k+++ + +i+ +i++++P++Lp v+ + + +fF++ +k+y+tg+rk+r+++ Eucgr.C00958.3.p 49 LPAGVKFDPTDQELI-EHLEAKVEAKDMKSHPlidefipTIEGEdGICYTHPEKLP-GVTRDGLSRHFFHRPSKAYTTGTRKRRKIQtecdlq 139 799**********.99*****5553344444434666646******.555666799**************733345555 PP NAM 80 ..sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk+++v++ +g+++g+kk+Lv+y g+++k+ekt+Wvmh+y+l Eucgr.C00958.3.p 140 ggETRWHKTGKTRPVMV-NGKQKGCKKILVLYtnFGKNRKPEKTNWVMHQYHL 191 44778********.999*******5547999999*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.96E-38	45	210	IPR003441	NAC domain
PROSITE profile	PS51005	33.01	49	210	IPR003441	NAC domain
Pfam	PF02365	2.6E-16	50	191	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 484 aa Download sequence Send to blast
MNNSSSSNLG SISSSDLIDA KLEEHQICGS KQCPGCGHKL DGKPDWLGLP AGVKFDPTDQ 60 ELIEHLEAKV EAKDMKSHPL IDEFIPTIEG EDGICYTHPE KLPGVTRDGL SRHFFHRPSK 120 AYTTGTRKRR KIQTECDLQG GETRWHKTGK TRPVMVNGKQ KGCKKILVLY TNFGKNRKPE 180 KTNWVMHQYH LGQHEEEKEG ELVVSKIFYQ TQPRQCNWSE RTIPATSTSA HAAEGSGDPN 240 NSSRRGGGSG GSGSSSTSKE VISRTDEISG SAVITAVTAA ISSYGTATTD IQQLKSEHFG 300 FIPFRKGFDE VGIGEASTGR EAPTSGTCED IRDHHQYQRL HHPVAPHDHQ LHHQHHVHHP 360 IATAAFHISR PSHPISAIIA PPAPLHQTAA SINILDEDSF HVSRMMLQNE FQQQQQHQQH 420 QQQEQHHKMG GRSASGLEEL IMGCTSSSTD IKEESSITNP QEPEWLMKYS PFWPDPDNPD 480 HHG*

Sequence ? help Back to Top

Protein Sequence Length: 484 aa Download sequence Send to blast

MNNSSSSNLG SISSSDLIDA KLEEHQICGS KQCPGCGHKL DGKPDWLGLP AGVKFDPTDQ  60
ELIEHLEAKV EAKDMKSHPL IDEFIPTIEG EDGICYTHPE KLPGVTRDGL SRHFFHRPSK  120
AYTTGTRKRR KIQTECDLQG GETRWHKTGK TRPVMVNGKQ KGCKKILVLY TNFGKNRKPE  180
KTNWVMHQYH LGQHEEEKEG ELVVSKIFYQ TQPRQCNWSE RTIPATSTSA HAAEGSGDPN  240
NSSRRGGGSG GSGSSSTSKE VISRTDEISG SAVITAVTAA ISSYGTATTD IQQLKSEHFG  300
FIPFRKGFDE VGIGEASTGR EAPTSGTCED IRDHHQYQRL HHPVAPHDHQ LHHQHHVHHP  360
IATAAFHISR PSHPISAIIA PPAPLHQTAA SINILDEDSF HVSRMMLQNE FQQQQQHQQH  420
QQQEQHHKMG GRSASGLEEL IMGCTSSSTD IKEESSITNP QEPEWLMKYS PFWPDPDNPD  480
HHG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	1e-12	47	191	13	140	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269\|PubMed:25265867, ECO:0000269\|PubMed:25535195}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00460	DAP	Transfer from AT4G29230	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.C00958.3.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010047653.1	0.0	PREDICTED: uncharacterized protein LOC104436544
Refseq	XP_010047654.1	0.0	PREDICTED: uncharacterized protein LOC104436544
Refseq	XP_010047655.1	0.0	PREDICTED: uncharacterized protein LOC104436544
Refseq	XP_010047656.1	0.0	PREDICTED: uncharacterized protein LOC104436544
Refseq	XP_010047657.1	0.0	PREDICTED: uncharacterized protein LOC104436544
Refseq	XP_018725377.1	0.0	PREDICTED: uncharacterized protein LOC104436544
Swissprot	Q9M0F8	0.0	NAC75_ARATH; NAC domain-containing protein 75
TrEMBL	A0A059CMC3	0.0	A0A059CMC3_EUCGR; Uncharacterized protein
STRING	XP_010047652.1	0.0	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29230.1	1e-168	NAC domain containing protein 75

Link Out ? help Back to Top
Phytozome	Eucgr.C00958.3.p

Publications ? help Back to Top
Droc G, et al. OryGenesDB: a database for rice reverse genetics. Nucleic Acids Res., 2006. 34(Database issue): p. D736-40 [PMID:16381969] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195]