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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.C00908.2.p | ||||||||
Common Name | EUGRSUZ_C00908, LOC104436500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | MYB_related | ||||||||
Protein Properties | Length: 297aa MW: 32205.4 Da PI: 9.5348 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 40.9 | 4.8e-13 | 119 | 163 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ ++ + +++G+g+W+ I+r ++Rt+ q+ s+ qk+ Eucgr.C00908.2.p 119 PWTEEEHRTFLMGLEKMGKGDWRGISRNYVTTRTPTQVASHAQKF 163 8******************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51257 | 7 | 1 | 28 | No hit | No description |
PROSITE profile | PS50158 | 8.779 | 3 | 18 | IPR001878 | Zinc finger, CCHC-type |
PROSITE profile | PS51294 | 17.337 | 112 | 168 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.42E-16 | 114 | 169 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 5.1E-17 | 116 | 167 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 2.2E-11 | 116 | 159 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.3E-10 | 116 | 166 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.4E-10 | 119 | 162 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.38E-9 | 119 | 164 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 297 aa Download sequence Send to blast |
MGRKCSRCGN IGHNSRTCTT FMGAASSCGL KLFGVQLDLS SSSPPSSSAS SGSAHPYSLV 60 IKKSLSMDRL SSSSASSSSP SSSLSSPRVL ADEHCNKTSL GYLSDGLAAR SQEKRKGVPW 120 TEEEHRTFLM GLEKMGKGDW RGISRNYVTT RTPTQVASHA QKFFLRQASL NKKKRRSSLF 180 DMMGRCSTFH EQSEPPRLIR TESSLRYEVV PLLAMSTFKP GDEERDREPH DSISRPPSLC 240 DLANPLELKP SPVNPIKNPS LSHAAPDLEL TLAAPMPLDQ NETSPSSLFI GSISVT* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 171 | 175 | KKKRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.C00908.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010047591.1 | 0.0 | PREDICTED: uncharacterized protein LOC104436500 isoform X2 | ||||
TrEMBL | A0A059CM61 | 0.0 | A0A059CM61_EUCGR; Uncharacterized protein | ||||
STRING | XP_010047590.1 | 0.0 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47390.1 | 2e-43 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.C00908.2.p |
Entrez Gene | 104436500 |